Sequence Similarity Clusters for the Entities in PDB 4BAQ

Entity #1 | Chains: A
THROMBIN LIGHT CHAIN protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 148 338 45
95 % 148 339 64 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 148 339 67
70 % 148 341 78
50 % 148 341 109
40 % 148 341 132
30 % 148 341 140
Entity #2 | Chains: B
THROMBIN HEAVY CHAIN protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 128 290 75
95 % 156 377 52 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.6
PDBFlex
90 % 156 384 48
70 % 156 408 46
50 % 156 408 84
40 % 965 1864 4
30 % 972 1886 6
Entity #3 | Chains: D
HIRUDIN VARIANT-1 protein, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures