Sequence Similarity Clusters for the Entities in PDB 4BAO

Entity #1 | Chains: A
THROMBIN LIGHT CHAIN protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 139 338 45
95 % 139 339 64 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 139 339 67
70 % 139 341 78
50 % 139 341 109
40 % 139 341 132
30 % 139 341 140
Entity #2 | Chains: B
THROMBIN HEAVY CHAIN protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 119 290 75
95 % 146 377 52 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.6
PDBFlex
90 % 146 384 48
70 % 146 408 46
50 % 146 408 84
40 % 937 1863 4
30 % 943 1885 6
Entity #3 | Chains: D
HIRUDIN VARIANT-2 protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures