Sequence Similarity Clusters for the Entities in PDB 4BAM

Entity #1 | Chains: A
THROMBIN LIGHT CHAIN protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 125 334 52
95 % 127 342 63 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 127 342 67
70 % 127 342 80
50 % 127 342 111
40 % 127 342 135
30 % 127 342 145
Entity #2 | Chains: B
THROMBIN HEAVY CHAIN protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 122 332 53
95 % 131 378 52 Flexibility: Low
Max RMSD: 3.5, Avg RMSD: 0.6
PDBFlex
90 % 131 385 56
70 % 131 409 47
50 % 131 409 85
40 % 861 1884 4
30 % 865 1898 7
Entity #3 | Chains: D
HIRUDIN VARIANT-1 protein, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures