Sequence Similarity Clusters for the Entities in PDB 4BAM

Entity #1 | Chains: A
THROMBIN LIGHT CHAIN protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 124 335 45
95 % 124 336 61 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 124 336 66
70 % 124 338 78
50 % 124 338 106
40 % 124 338 129
30 % 124 338 136
Entity #2 | Chains: B
THROMBIN HEAVY CHAIN protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 110 290 57
95 % 128 374 35
90 % 128 381 39
70 % 128 405 46
50 % 128 405 84
40 % 792 1698 4
30 % 837 1848 6
Entity #3 | Chains: D
HIRUDIN VARIANT-1 protein, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.