Sequence Similarity Clusters for the Entities in PDB 4BAK

Entity #1 | Chains: A
THROMBIN LIGHT CHAIN protein, length: 36 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 141 338 45
95 % 141 339 62 Flexibility: Low
Max RMSD: 5.3, Avg RMSD: 0.7
PDBFlex
90 % 141 339 66
70 % 141 341 78
50 % 141 341 107
40 % 141 341 130
30 % 141 341 137
Entity #2 | Chains: B
THROMBIN HEAVY CHAIN protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 121 290 58
95 % 148 377 35 Flexibility: Low
Max RMSD: 3.1, Avg RMSD: 0.6
PDBFlex
90 % 148 384 39
70 % 148 408 46
50 % 148 408 84
40 % 887 1719 4
30 % 941 1869 6
Entity #3 | Chains: D
HIRUDIN VARIANT-1 protein, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures