POP-OUT | CLOSE

An Information Portal to 110790 Biological Macromolecular Structures

prototype foamy virus strand transfer complexes on product DNA
Sequence Clustering and Redundancy Reduction Results
4BAC
Sequence Clusters for the Sequence Entities in PDB 4BAC
Entity #1: Chains: A,B - INTEGRASE protein, length: 396 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 26888
95% 29 38 398
90% 29 38 424
70% 29 38 457
50% 29 38 503
40% 29 38 542
30% 29 38 550
Entity #2: Chains: C - 5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP *TP*TP*GP*TP*AP)-3' dna, length: 19 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: D - DNA (38-MER) dna, length: 38 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: E - 5'-D(*AP*GP*GP*AP*GP*CP*CP*AP*AP*GP*AP*CP*GP*GP *AP*TP*CP)-3' dna, length: 17 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.