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prototype foamy virus strand transfer complexes on product DNA
Sequence Clustering and Redundancy Reduction Results
4BAC
Sequence Clusters for the Sequence Entities in PDB 4BAC
Entity #1: Chains: A,B - INTEGRASE protein, length: 396 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 26195
95% 29 38 393
90% 29 38 418
70% 29 38 448
50% 29 38 492
40% 29 38 526
30% 29 38 531
Entity #2: Chains: C - 5'-D(*AP*TP*TP*GP*TP*CP*AP*TP*GP*GP*AP*AP*TP*TP *TP*TP*GP*TP*AP)-3' dna, length: 19 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: D - DNA (38-MER) dna, length: 38 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: E - 5'-D(*AP*GP*GP*AP*GP*CP*CP*AP*AP*GP*AP*CP*GP*GP *AP*TP*CP)-3' dna, length: 17 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.