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Crystal structure of the 30S ribosome in complex with compound 37
Sequence Clustering and Redundancy Reduction Results
4B3S
Sequence Clusters for the Sequence Entities in PDB 4B3S
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1521 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 83 257 29
95% 83 259 47
90% 83 259 51
70% 83 259 61
50% 123 374 34
40% 123 374 46
30% 123 379 66
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 83 260 26
95% 83 260 43
90% 83 260 46
70% 83 260 57
50% 117 368 42
40% 121 408 40
30% 121 408 53
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 53 229 36
95% 83 267 36
90% 83 267 38
70% 117 380 24
50% 117 380 33
40% 117 380 45
30% 117 380 69
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 83 261 22
95% 83 261 41
90% 83 261 43
70% 83 261 55
50% 117 370 39
40% 117 370 53
30% 119 406 57
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 TYPE Z protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 83 259 27
95% 83 259 48
90% 83 259 52
70% 83 259 62
50% 83 259 97
40% 83 259 123
30% 83 259 141
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 83 263 20
95% 87 268 35
90% 87 268 37
70% 87 268 48
50% 124 381 32
40% 124 381 43
30% 124 381 68
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 83 255 30
95% 83 260 45
90% 83 260 48
70% 83 260 59
50% 83 260 94
40% 83 260 120
30% 117 368 78
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 92 220
95% 83 254 50
90% 83 258 53
70% 83 258 63
50% 83 258 99
40% 83 258 124
30% 83 258 142
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 11 49 464
95% 78 224 63
90% 78 224 67
70% 78 224 81
50% 78 224 115
40% 78 224 141
30% 78 224 162
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 78 226 37
95% 78 226 62
90% 78 226 65
70% 78 226 80
50% 118 371 38
40% 118 371 51
30% 118 371 75
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 83 260 24
95% 83 261 38
90% 83 261 41
70% 83 261 52
50% 83 261 92
40% 117 368 55
30% 117 368 77
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 12 61 360
95% 83 259 46
90% 83 259 50
70% 83 259 60
50% 83 259 96
40% 83 259 122
30% 83 259 140
Entity #21: Chains: V - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 83 241 34
95% 83 241 55
90% 83 241 58
70% 83 241 69
50% 83 241 107
40% 83 241 130
30% 83 241 151
Entity #22: Chains: W - 5'-R(*UP*UP*CP*AP*AP*AP)-3' rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: Z - 5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*CP)-3' rna, length: 16 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 77 222 39
95% 77 222 65
90% 77 222 69
70% 77 222 82
50% 89 285 76
40% 89 285 100
30% 89 285 124
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 82 253 31
95% 83 261 39
90% 83 261 42
70% 83 261 53
50% 117 368 40
40% 117 369 54
30% 117 369 76
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 161 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 83 260 25
95% 83 260 42
90% 83 260 44
70% 83 260 56
50% 118 372 37
40% 118 372 50
30% 118 374 72
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 85 265 18
95% 91 271 33
90% 91 271 35
70% 91 271 47
50% 91 271 87
40% 91 271 112
30% 115 318 94
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 84 264 19
95% 84 265 37
90% 84 265 39
70% 84 265 49
50% 107 313 56
40% 107 314 72
30% 107 314 96
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 84 260 21
95% 84 260 40
90% 84 264 40
70% 84 264 50
50% 120 374 35
40% 121 376 47
30% 124 413 52
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 113 134
95% 83 260 44
90% 83 260 47
70% 83 260 58
50% 117 368 41
40% 117 368 56
30% 119 404 58
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.