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Crystal structure of the 30S ribosome in complex with compound 37
Sequence Clustering and Redundancy Reduction Results
4B3S
Sequence Clusters for the Sequence Entities in PDB 4B3S
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1521 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 265 27
95% 91 267 47
90% 91 267 49
70% 91 267 59
50% 131 382 34
40% 131 382 45
30% 131 387 65
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 268 25
95% 91 268 43
90% 91 268 45
70% 91 268 55
50% 125 376 41
40% 129 416 40
30% 129 416 52
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 61 237 35
95% 91 275 35
90% 91 275 37
70% 125 388 24
50% 125 388 33
40% 125 388 44
30% 125 388 68
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 269 22
95% 91 269 41
90% 91 269 43
70% 91 269 53
50% 125 378 38
40% 125 378 51
30% 127 414 55
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 TYPE Z protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 267 26
95% 91 267 48
90% 91 267 50
70% 91 267 60
50% 91 267 93
40% 91 267 119
30% 91 267 140
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 271 20
95% 95 276 32
90% 95 276 34
70% 95 276 47
50% 132 389 32
40% 132 389 43
30% 132 389 67
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 263 28
95% 91 268 45
90% 91 268 47
70% 91 268 57
50% 91 268 91
40% 91 268 117
30% 125 376 76
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 92 220
95% 91 262 49
90% 91 266 51
70% 91 266 61
50% 91 266 94
40% 91 266 120
30% 91 266 142
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 11 49 466
95% 86 232 61
90% 86 232 64
70% 86 232 78
50% 86 232 113
40% 86 232 138
30% 86 232 158
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 86 234 37
95% 86 234 59
90% 86 234 63
70% 86 234 77
50% 126 379 37
40% 126 379 49
30% 126 379 72
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 268 23
95% 91 269 38
90% 91 269 41
70% 91 269 51
50% 91 269 90
40% 125 376 53
30% 125 376 75
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 12 61 362
95% 91 267 46
90% 91 267 48
70% 91 267 58
50% 91 267 92
40% 91 267 118
30% 91 267 139
Entity #21: Chains: V - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 249 33
95% 91 249 52
90% 91 249 55
70% 91 249 66
50% 91 249 103
40% 91 249 130
30% 91 249 150
Entity #22: Chains: W - 5'-R(*UP*UP*CP*AP*AP*AP)-3' rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: Z - 5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*CP)-3' rna, length: 16 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 85 230 38
95% 85 230 62
90% 85 230 65
70% 85 230 79
50% 97 293 73
40% 97 293 97
30% 97 293 118
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 90 261 29
95% 91 269 39
90% 91 269 42
70% 91 269 52
50% 125 376 39
40% 125 377 52
30% 125 377 74
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 161 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 268 24
95% 91 268 42
90% 91 268 44
70% 91 268 54
50% 126 380 36
40% 126 380 48
30% 126 382 70
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 93 273 18
95% 99 279 29
90% 99 279 30
70% 99 279 44
50% 99 279 82
40% 99 279 106
30% 123 326 94
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 92 272 19
95% 92 273 36
90% 92 273 38
70% 92 273 49
50% 115 321 56
40% 115 322 73
30% 115 322 96
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 92 268 21
95% 92 268 40
90% 92 272 39
70% 92 272 50
50% 128 382 35
40% 129 384 46
30% 132 421 51
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 113 135
95% 91 268 44
90% 91 268 46
70% 91 268 56
50% 125 376 40
40% 125 376 54
30% 127 412 57
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.