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Crystal structure of the 30S ribosome in complex with compound 37
Sequence Clustering and Redundancy Reduction Results
4B3S
Sequence Clusters for the Sequence Entities in PDB 4B3S
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1521 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 83 252 29
95% 83 254 48
90% 83 254 51
70% 83 254 63
50% 123 369 34
40% 123 369 48
30% 123 374 67
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 83 255 27
95% 83 255 44
90% 83 255 47
70% 83 255 59
50% 117 363 42
40% 121 403 39
30% 121 403 53
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 53 224 37
95% 83 262 36
90% 83 262 38
70% 117 375 24
50% 117 375 33
40% 117 375 47
30% 117 375 71
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 83 256 24
95% 83 256 42
90% 83 256 45
70% 83 256 57
50% 117 365 39
40% 117 365 53
30% 119 401 57
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 TYPE Z protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 83 254 28
95% 83 254 49
90% 83 254 52
70% 83 254 64
50% 83 254 99
40% 83 254 124
30% 83 254 144
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 83 258 21
95% 87 263 35
90% 87 263 37
70% 87 263 48
50% 124 376 32
40% 124 376 45
30% 124 376 69
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 83 250 31
95% 83 255 46
90% 83 255 49
70% 83 255 61
50% 83 255 97
40% 83 255 122
30% 117 363 78
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 92 219
95% 83 249 51
90% 83 253 53
70% 83 253 65
50% 83 253 100
40% 83 253 126
30% 83 253 146
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 11 49 463
95% 78 221 64
90% 78 221 68
70% 78 221 81
50% 78 221 116
40% 78 221 144
30% 78 221 166
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 78 223 38
95% 78 223 63
90% 78 223 67
70% 78 223 80
50% 118 366 38
40% 118 366 52
30% 118 366 75
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 83 255 25
95% 83 256 39
90% 83 256 43
70% 83 256 55
50% 83 256 96
40% 117 363 55
30% 117 363 77
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 12 61 359
95% 83 254 47
90% 83 254 50
70% 83 254 62
50% 83 254 98
40% 83 254 123
30% 83 254 143
Entity #21: Chains: V - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 83 238 34
95% 83 238 55
90% 83 238 59
70% 83 238 71
50% 83 238 110
40% 83 238 133
30% 83 238 153
Entity #22: Chains: W - 5'-R(*UP*UP*CP*AP*AP*AP)-3' rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: Z - 5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*CP)-3' rna, length: 16 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 77 219 39
95% 77 219 66
90% 77 219 70
70% 77 219 83
50% 89 282 81
40% 89 282 101
30% 89 282 123
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 82 248 32
95% 83 256 40
90% 83 256 44
70% 83 256 56
50% 117 363 40
40% 117 364 54
30% 117 364 76
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 161 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 83 255 26
95% 83 255 43
90% 83 255 46
70% 83 255 58
50% 118 367 37
40% 118 367 51
30% 118 369 72
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 85 260 18
95% 91 266 34
90% 91 266 36
70% 91 266 47
50% 91 266 88
40% 91 266 112
30% 115 313 95
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 84 259 20
95% 84 260 37
90% 84 260 39
70% 84 260 51
50% 107 308 57
40% 107 309 74
30% 107 309 97
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 84 255 23
95% 84 255 41
90% 84 259 40
70% 84 259 52
50% 120 369 36
40% 121 371 49
30% 124 408 50
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 113 134
95% 83 255 45
90% 83 255 48
70% 83 255 60
50% 117 363 41
40% 117 363 56
30% 119 399 59
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.