Sequence Similarity Clusters for the Entities in PDB 4B3S

Entity #1 | Chains: A
16S RIBOSOMAL RNA rna, length: 1521 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S RIBOSOMAL PROTEIN S10 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 113 267 37
95 % 113 268 52
90 % 113 268 55
70 % 113 268 67
50 % 144 397 25
40 % 144 397 36
30 % 160 496 31
Entity #11 | Chains: K
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 113 269 35
95 % 113 269 48
90 % 113 269 51
70 % 113 269 62
50 % 138 391 33
40 % 156 493 18
30 % 156 493 33
Entity #12 | Chains: L
30S RIBOSOMAL PROTEIN S12 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 71 217 48
95 % 113 276 37
90 % 113 276 41
70 % 138 404 20
50 % 138 409 23
40 % 138 409 33
30 % 138 409 55
Entity #13 | Chains: M
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 113 270 33
95 % 113 270 45
90 % 113 270 49
70 % 113 270 59
50 % 141 396 31
40 % 141 396 44
30 % 157 497 34
Entity #14 | Chains: N
30S RIBOSOMAL PROTEIN S14 TYPE Z protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 113 268 36
95 % 113 268 53
90 % 113 268 56
70 % 113 270 60
50 % 113 270 89
40 % 113 270 111
30 % 113 270 123
Entity #15 | Chains: O
30S RIBOSOMAL PROTEIN S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 113 272 29
95 % 117 277 36
90 % 117 277 40
70 % 117 277 51
50 % 145 404 24
40 % 145 407 34
30 % 145 407 56
Entity #16 | Chains: P
30S RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 113 264 38
95 % 113 269 50
90 % 113 269 53
70 % 113 269 64
50 % 113 271 88
40 % 113 271 109
30 % 141 392 64
Entity #17 | Chains: Q
30S RIBOSOMAL PROTEIN S17 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 87 242
95 % 113 263 54
90 % 113 267 57
70 % 113 267 68
50 % 113 267 93
40 % 113 267 114
30 % 113 267 127
Entity #18 | Chains: R
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 51 684
95 % 102 234 62
90 % 102 234 66
70 % 102 234 78
50 % 102 234 107
40 % 102 234 132
30 % 102 234 141
Entity #19 | Chains: S
30S RIBOSOMAL PROTEIN S19 protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 114 272 28
95 % 114 272 41
90 % 114 272 46
70 % 114 272 56
50 % 139 396 27
40 % 139 399 38
30 % 139 399 57
Entity #2 | Chains: B
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 113 269 31
95 % 113 270 42
90 % 113 270 47
70 % 113 270 57
50 % 138 390 32
40 % 138 393 43
30 % 138 393 61
Entity #20 | Chains: T
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 51 480
95 % 113 268 51
90 % 113 268 54
70 % 113 268 66
50 % 113 268 91
40 % 113 268 112
30 % 113 268 124
Entity #21 | Chains: V
30S RIBOSOMAL PROTEIN THX protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 113 259 42
95 % 113 259 57
90 % 113 259 61
70 % 113 259 73
50 % 113 259 96
40 % 113 259 119
30 % 113 259 130
Entity #22 | Chains: W
5'-R(*UP*UP*CP*AP*AP*AP)-3' rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #23 | Chains: Z
5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*CP)-3' rna, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 101 233 45
95 % 101 233 63
90 % 101 233 67
70 % 101 233 79
50 % 105 304 81
40 % 105 304 100
30 % 105 304 113
Entity #4 | Chains: D
30S RIBOSOMAL PROTEIN S4 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 112 262 39
95 % 113 270 43
90 % 113 270 48
70 % 113 270 58
50 % 138 392 30
40 % 138 395 41
30 % 138 395 60
Entity #5 | Chains: E
30S RIBOSOMAL PROTEIN S5 protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 113 269 34
95 % 113 269 47
90 % 113 269 50
70 % 113 269 61
50 % 139 396 29
40 % 139 396 42
30 % 139 398 59
Entity #6 | Chains: F
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 115 274 26
95 % 121 280 34
90 % 121 280 39
70 % 121 280 50
50 % 121 280 86
40 % 121 280 105
30 % 144 334 90
Entity #7 | Chains: G
30S RIBOSOMAL PROTEIN S7 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 114 273 27
95 % 114 274 39
90 % 114 274 43
70 % 114 274 54
50 % 139 338 68
40 % 139 341 78
30 % 139 341 91
Entity #8 | Chains: H
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 114 269 32
95 % 114 269 44
90 % 114 273 44
70 % 114 273 55
50 % 141 397 26
40 % 142 401 35
30 % 160 506 29
Entity #9 | Chains: I
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 91 207
95 % 113 269 49
90 % 113 269 52
70 % 113 269 63
50 % 138 391 34
40 % 138 391 45
30 % 154 494 35

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.