Sequence Similarity Clusters for the Entities in PDB 4B3R

Entity #1 | Chains: A
16S RIBOSOMAL RNA rna, length: 1521 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S RIBOSOMAL PROTEIN S10 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 93 314 38
95 % 93 314 55 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 1.1
PDBFlex
90 % 93 314 60
70 % 93 314 69
50 % 119 502 21
40 % 130 640 23
30 % 130 642 36
Entity #11 | Chains: K
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 93 315 36
95 % 93 315 52 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.7
PDBFlex
90 % 93 315 57
70 % 93 315 67
50 % 113 495 29
40 % 126 644 22
30 % 126 644 35
Entity #12 | Chains: L
30S RIBOSOMAL PROTEIN S12 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 80 282 46
95 % 93 322 42 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 93 322 48
70 % 114 510 14
50 % 114 513 20
40 % 114 513 34
30 % 114 513 54
Entity #13 | Chains: M
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 93 316 33
95 % 93 316 48 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.7
PDBFlex
90 % 93 316 54
70 % 93 316 64
50 % 114 499 28
40 % 114 499 39
30 % 125 645 38
Entity #14 | Chains: N
30S RIBOSOMAL PROTEIN S14 TYPE Z protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 93 314 37
95 % 93 314 54 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.8
PDBFlex
90 % 93 314 59
70 % 93 321 58
50 % 93 332 91
40 % 93 332 108
30 % 93 332 121
Entity #15 | Chains: O
30S RIBOSOMAL PROTEIN S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 93 320 27
95 % 96 323 41 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 96 323 46
70 % 96 323 57
50 % 119 507 22
40 % 119 512 33
30 % 119 512 53
Entity #16 | Chains: P
30S RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 93 310 40
95 % 93 315 50 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 93 315 55
70 % 93 315 65
50 % 93 327 93
40 % 114 492 43
30 % 114 492 60
Entity #17 | Chains: Q
30S RIBOSOMAL PROTEIN S17 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 40 941
95 % 93 312 57 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 0.7
PDBFlex
90 % 93 312 62
70 % 93 312 73
50 % 93 312 98
40 % 93 312 116
30 % 93 312 129
Entity #18 | Chains: R
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 84 254 55
95 % 84 262 71 Flexibility: Low
Max RMSD: 8.4, Avg RMSD: 0.9
PDBFlex
90 % 84 262 75
70 % 84 262 87
50 % 84 262 117
40 % 84 262 140
30 % 84 262 154
Entity #19 | Chains: S
30S RIBOSOMAL PROTEIN S19 protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 94 318 30
95 % 94 318 45 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 0.9
PDBFlex
90 % 94 318 51
70 % 114 495 16
50 % 114 501 24
40 % 114 504 35
30 % 114 504 55
Entity #2 | Chains: B
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 93 315 32
95 % 93 316 47 Flexibility: Low
Max RMSD: 9.2, Avg RMSD: 1.6
PDBFlex
90 % 93 316 53
70 % 93 316 63
50 % 113 481 36
40 % 113 487 44
30 % 113 487 61
Entity #20 | Chains: T
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 87 269 50
95 % 93 314 56 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.7
PDBFlex
90 % 93 314 61
70 % 93 314 70
50 % 93 314 96
40 % 93 314 113
30 % 93 314 126
Entity #21 | Chains: V
30S RIBOSOMAL PROTEIN THX protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 93 304 43
95 % 93 304 58 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.5
PDBFlex
90 % 93 304 63
70 % 93 304 74
50 % 93 304 101
40 % 93 304 119
30 % 93 304 131
Entity #22 | Chains: W
5'-R(*UP*UP*CP*AP*AP*AP)-3' rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #23 | Chains: Z
5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*CP-3' rna, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 84 262 54
95 % 84 262 70 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 84 262 74
70 % 84 262 86
50 % 87 338 89
40 % 87 338 105
30 % 87 338 119
Entity #4 | Chains: D
30S RIBOSOMAL PROTEIN S4 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 93 316 31
95 % 93 316 46 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.5
PDBFlex
90 % 93 316 52
70 % 93 316 61
50 % 113 495 27
40 % 113 501 36
30 % 113 501 56
Entity #5 | Chains: E
30S RIBOSOMAL PROTEIN S5 protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 93 315 35
95 % 93 315 51 Flexibility: Low
Max RMSD: 4.8, Avg RMSD: 0.6
PDBFlex
90 % 93 315 56
70 % 93 315 66
50 % 114 491 31
40 % 114 491 42
30 % 114 493 59
Entity #6 | Chains: F
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 94 320 28
95 % 100 326 40 Flexibility: Low
Max RMSD: 2.9, Avg RMSD: 0.9
PDBFlex
90 % 100 326 45
70 % 100 326 55
50 % 100 326 92
40 % 100 326 110
30 % 119 431 87
Entity #7 | Chains: G
30S RIBOSOMAL PROTEIN S7 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 94 320 29
95 % 94 320 43 Flexibility: Low
Max RMSD: 4.2, Avg RMSD: 0.8
PDBFlex
90 % 94 320 49
70 % 94 320 59
50 % 113 434 62
40 % 113 440 76
30 % 113 440 86
Entity #8 | Chains: H
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 94 315 34
95 % 94 315 49 Flexibility: No
Max RMSD: 1.3, Avg RMSD: 0.4
PDBFlex
90 % 94 319 50
70 % 94 319 60
50 % 116 500 23
40 % 129 661 21
30 % 129 661 34
Entity #9 | Chains: I
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 96 251
95 % 93 315 53 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 0.7
PDBFlex
90 % 93 315 58
70 % 93 315 68
50 % 113 486 33
40 % 113 486 45
30 % 124 643 37

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2VQE 9 I 30S RIBOSOMAL PROTEIN S9 274
2 4JYA 9 I 30S ribosomal protein S9 274
3 4KHP 9 I 30S Ribosomal protein S9 274
4 4V9H 22 AI 30S ribosomal protein S9 274
5 2UXC 9 I RIBOSOMAL PROTEIN S9 274
6 4B3M 9 I 30S RIBOSOMAL PROTEIN S9 274
7 4B3T 9 I 30S RIBOSOMAL PROTEIN S9 274
8 2VQF 9 I 30S RIBOSOMAL PROTEIN S9 274
9 4B3R 9 I 30S RIBOSOMAL PROTEIN S9 274
10 4JV5 9 I 30S ribosomal protein S9 274
11 1J5E 9 I 30S RIBOSOMAL PROTEIN S9 274
12 4GKK 9 I 30S ribosomal protein S9 274
13 4GKJ 9 I 30S ribosomal protein S9 274
14 1FJG 10 I 30S RIBOSOMAL PROTEIN S9 274
15 3T1Y 9 I 30S ribosomal protein S9 274
16 1XMQ 11 I 30S Ribosomal Protein S9 274
17 4B3S 9 I 30S RIBOSOMAL PROTEIN S9 274
18 1N32 11 I 30S RIBOSOMAL PROTEIN S9 274
19 1I94 9 I 30S RIBOSOMAL PROTEIN S9 274
20 4K0K 9 I 30S ribosomal protein S9 274
21 5J4D 43 RA, WC 30S ribosomal protein S9 274
22 4V5J 9 AI, CI 30S RIBOSOMAL PROTEIN S9 274
23 4V7Y 9 AI, CI 30S ribosomal protein S9 274
24 3OTO 9 I 30S RIBOSOMAL PROTEIN S9 274
25 4V8Q 43 BI 30S RIBOSOMAL PROTEIN S9 274
26 1HR0 10 I 30S RIBOSOMAL PROTEIN S9 274
27 4AQY 9 I 30S RIBOSOMAL PROTEIN S9 274
28 4V5L 9 AI 30S RIBOSOMAL PROTEIN S9 274
29 4V7X 9 AI, CI 30S ribosomal protein S9 274
30 1IBL 12 I 30S RIBOSOMAL PROTEIN S9 274
31 4V7W 9 AI, CI 30S ribosomal protein S9 274
32 6C5L 9 AI, CI 30S ribosomal protein S9 274
33 4WT8 9 AI, BI 30S ribosomal protein S9 274
34 1XNR 11 I 16S Ribosomal protein S9 274
35 4V51 9 AI, CI 30S RIBOSOMAL PROTEIN S9 274
36 1HNZ 10 I 30S RIBOSOMAL PROTEIN S9 274
37 1XNQ 11 I Ribosomal protein S9 274
38 4V8A 39 CI, DI 30S ribosomal protein S9 274
39 4V5K 9 AI, CI 30S RIBOSOMAL PROTEIN S9 274
40 4V5C 9 AI, CI 30S RIBOSOMAL PROTEIN S9 274
41 4V5E 9 AI, CI 30S RIBOSOMAL PROTEIN S9 274
42 5V8I 40 1i, 2i 30S ribosomal protein S9 274
43 4V5D 9 AI, CI 30S RIBOSOMAL PROTEIN S9 274
44 4V7Z 9 AI, CI 30S ribosomal protein S9 274
45 4V9I 9 AI, CI 30S Ribosomal protein S9 274
46 1XMO 11 I 30S ribosomal protein S9 274
47 3T1H 9 I 30S ribosomal protein S9 274
48 2UXD 9 I RIBOSOMAL PROTEIN S9 274
49 1N33 11 I 30S RIBOSOMAL PROTEIN S9 274
50 1IBK 10 I 30S RIBOSOMAL PROTEIN S9 274
51 1HNW 10 I 30S RIBOSOMAL PROTEIN S9 274
52 1IBM 12 I 30S RIBOSOMAL PROTEIN S9 274
53 4V84 9 AI, CI 30S ribosomal protein S9 274
54 1HNX 10 I 30S RIBOSOMAL PROTEIN S9 274
55 4V9Q 39 BI, DI 30S ribosomal protein S9 274
56 4V9N 12 AI, CI 30S ribosomal protein S9 274
57 4V67 11 AI, CI 30S ribosomal protein S9 274
58 4V83 9 AI, CI 30S ribosomal protein S9 274
59 2E5L 10 I 30S ribosomal protein S9 274
60 2HHH 9 I 30S ribosomal protein S9 274
61 2UXB 9 I RIBOSOMAL PROTEIN S9 274
62 1I96 9 I 30S RIBOSOMAL PROTEIN S9 274
63 4V9K 8 AI, CI 30S ribosomal protein S9 274
64 1N34 10 I 30S RIBOSOMAL PROTEIN S9 274
65 4V5A 9 AI, CI 30S RIBOSOMAL PROTEIN S9 274
66 4V63 11 AI, CI 30S ribosomal protein S9 274
67 4KVB 9 I 30S ribosomal protein S9 274
68 4XEJ 36 AS09, BS09 30S ribosomal protein S9 274
69 4V7P 9 AI, DI 30S ribosomal protein S9 274
70 1N36 9 I 30S RIBOSOMAL PROTEIN S9 274
71 2ZM6 9 I 30S ribosomal protein S9 274
72 5D8B 36 FC, JA 30S ribosomal protein S9 274
73 2F4V 10 I 30S ribosomal protein S9 274
74 1I97 9 I 30S RIBOSOMAL PROTEIN S9 274
75 4V9J 8 AI, CI 30S ribosomal protein S9 274
76 1I95 9 I 30S RIBOSOMAL PROTEIN S9 274
77 4V8O 9 AI 30S RIBOSOMAL PROTEIN S9 274
78 4V4J 42 j 30S ribosomal protein S9 274
79 4V4I 42 j 30S ribosomal protein S9 274
80 4V4P 44 BL 30S ribosomal protein S9 274
81 4V4R 12 AI 30S ribosomal protein S9 274
82 4V4S 12 AI 30S ribosomal protein S9 274
83 4V4T 12 AI 30S ribosomal protein S9 274
84 4V49 11 AI 30S ribosomal protein S9 562
85 4V4A 9 AI 30S ribosomal protein S9 562
86 4V4G 9 AI, CI, EI, GI, II 30S ribosomal protein S9 562
87 6BOH 43 SA, XC 30S ribosomal protein S9 274
88 6BOK 42 QA, TC 30S ribosomal protein S9 274
89 6B4V 43 RA, VC 30S ribosomal protein S9 274
90 4V68 16 AI 30S ribosomal protein S9 274
91 2R1G 8 G 30S ribosomal protein S9 274
92 1ML5 14 L 30S RIBOSOMAL PROTEIN S9 562
93 1JGO 12 L 30S RIBOSOMAL PROTEIN S9 274
94 1JGP 12 L 30S RIBOSOMAL PROTEIN S9 274
95 1JGQ 12 L 30S RIBOSOMAL PROTEIN S9 274
96 4V42 12 AL 30S RIBOSOMAL PROTEIN S9 274