Sequence Similarity Clusters for the Entities in PDB 4B3R

Entity #1 | Chains: A
16S RIBOSOMAL RNA rna, length: 1521 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S RIBOSOMAL PROTEIN S10 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 80 267 39
95 % 80 268 54
90 % 80 268 57
70 % 80 268 69
50 % 105 400 26
40 % 105 400 37
30 % 115 500 32
Entity #11 | Chains: K
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 80 269 36
95 % 80 269 50
90 % 80 269 53
70 % 80 269 64
50 % 99 393 35
40 % 111 499 19
30 % 111 499 33
Entity #12 | Chains: L
30S RIBOSOMAL PROTEIN S12 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 52 217 50
95 % 80 276 40
90 % 80 276 44
70 % 99 406 22
50 % 99 411 25
40 % 99 411 35
30 % 99 411 55
Entity #13 | Chains: M
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 80 270 34
95 % 80 270 47
90 % 80 270 51
70 % 80 270 61
50 % 100 398 33
40 % 100 398 46
30 % 110 500 36
Entity #14 | Chains: N
30S RIBOSOMAL PROTEIN S14 TYPE Z protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 80 268 38
95 % 80 268 55
90 % 80 268 58
70 % 80 270 62
50 % 80 270 90
40 % 80 270 112
30 % 80 270 124
Entity #15 | Chains: O
30S RIBOSOMAL PROTEIN S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 80 272 30
95 % 83 277 39
90 % 83 277 43
70 % 83 277 55
50 % 105 406 27
40 % 105 409 36
30 % 105 409 56
Entity #16 | Chains: P
30S RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 80 264 40
95 % 80 269 52
90 % 80 269 55
70 % 80 269 66
50 % 80 271 89
40 % 80 271 110
30 % 100 394 63
Entity #17 | Chains: Q
30S RIBOSOMAL PROTEIN S17 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 87 246
95 % 80 263 57
90 % 80 267 59
70 % 80 267 70
50 % 80 267 94
40 % 80 267 115
30 % 80 267 127
Entity #18 | Chains: R
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 51 692
95 % 74 234 64
90 % 74 234 68
70 % 74 234 80
50 % 74 234 108
40 % 74 234 133
30 % 74 234 142
Entity #19 | Chains: S
30S RIBOSOMAL PROTEIN S19 protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 81 272 29
95 % 81 272 43
90 % 81 272 48
70 % 81 272 58
50 % 100 398 30
40 % 100 401 40
30 % 100 401 58
Entity #2 | Chains: B
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 80 269 32
95 % 80 270 44
90 % 80 270 49
70 % 80 270 59
50 % 99 392 34
40 % 99 395 45
30 % 99 395 62
Entity #20 | Chains: T
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 51 488
95 % 80 268 53
90 % 80 268 56
70 % 80 268 68
50 % 80 268 92
40 % 80 268 113
30 % 80 268 125
Entity #21 | Chains: V
30S RIBOSOMAL PROTEIN THX protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 80 259 43
95 % 80 259 59
90 % 80 259 63
70 % 80 259 75
50 % 80 259 97
40 % 80 259 120
30 % 80 259 130
Entity #22 | Chains: W
5'-R(*UP*UP*CP*AP*AP*AP)-3' rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #23 | Chains: Z
5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*CP-3' rna, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 74 233 47
95 % 74 233 65
90 % 74 233 69
70 % 74 233 81
50 % 77 306 83
40 % 77 306 102
30 % 77 306 113
Entity #4 | Chains: D
30S RIBOSOMAL PROTEIN S4 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 80 262 41
95 % 80 270 45
90 % 80 270 50
70 % 80 270 60
50 % 99 394 32
40 % 99 397 42
30 % 99 397 61
Entity #5 | Chains: E
30S RIBOSOMAL PROTEIN S5 protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 80 269 35
95 % 80 269 49
90 % 80 269 52
70 % 80 269 63
50 % 100 398 31
40 % 100 398 43
30 % 100 400 59
Entity #6 | Chains: F
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 81 274 27
95 % 87 280 36
90 % 87 280 41
70 % 87 280 52
50 % 87 280 87
40 % 87 280 106
30 % 105 334 90
Entity #7 | Chains: G
30S RIBOSOMAL PROTEIN S7 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 81 273 28
95 % 81 274 41
90 % 81 274 45
70 % 81 274 56
50 % 99 338 71
40 % 99 341 79
30 % 99 341 93
Entity #8 | Chains: H
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 81 269 33
95 % 81 269 46
90 % 81 273 46
70 % 81 273 57
50 % 102 399 29
40 % 103 403 38
30 % 114 512 30
Entity #9 | Chains: I
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 91 211
95 % 80 269 51
90 % 80 269 54
70 % 80 269 65
50 % 99 393 36
40 % 99 393 47
30 % 109 499 35

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.