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Structures of HIV-1 RT and RNA-DNA Complex Reveal a Unique RT Conformation and Substrate Interface
Sequence Clustering and Redundancy Reduction Results
4B3O
Sequence Clusters for the Sequence Entities in PDB 4B3O
Entity #1: Chains: A - REVERSE TRANSCRIPTASE/RIBONUCLEASE H protein, length: 560 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 40355
95% 202 208 76
90% 202 208 79
70% 202 208 94
50% 203 209 132
40% 203 209 151
30% 203 209 166
Entity #2: Chains: B - P51 RT protein, length: 441 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 3 19876
95% 196 202 82
90% 196 202 87
70% 196 202 103
50% 197 203 136
40% 197 203 157
30% 197 203 176
Entity #3: Chains: D - 5'-D(*CP*GP*TP*AP*TP*GP*CP*CP*TP*AP*TP*AP*GP*TP *TP*AP*TP*TP*GP*TP*GP*GP*CP*C)-3' dna, length: 24 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: R - 5'-R(*AP*UP*GP*AP*3DRP*GP*GP*CP*CP*AP*CP*AP*AP*UP*AP *AP*CP*UP*AP*UP*AP*GP*GP*CP*AP*UP*A)-3' rna, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.