Sequence Similarity Clusters for the Entities in PDB 4B3M

Entity #1 | Chains: A
16S RIBOSOMAL RNA rna, length: 1521 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S RIBOSOMAL PROTEIN S10 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 60 252 35
95 % 60 253 48
90 % 60 253 53
70 % 60 253 63
50 % 72 348 28
40 % 72 348 38
30 % 77 420 36
Entity #11 | Chains: K
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 60 254 33
95 % 60 254 44
90 % 60 254 49
70 % 60 254 58
50 % 66 342 36
40 % 73 421 22
30 % 73 422 35
Entity #12 | Chains: L
30S RIBOSOMAL PROTEIN S12 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 206 45
95 % 60 261 35
90 % 60 261 39
70 % 66 353 23
50 % 66 354 27
40 % 66 354 37
30 % 66 354 56
Entity #13 | Chains: M
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 60 255 30
95 % 60 255 41
90 % 60 255 46
70 % 60 255 55
50 % 66 347 33
40 % 66 347 45
30 % 71 421 41
Entity #14 | Chains: N
30S RIBOSOMAL PROTEIN S14 TYPE Z protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 60 253 34
95 % 60 253 49
90 % 60 253 54
70 % 60 254 61
50 % 60 254 86
40 % 60 254 107
30 % 60 254 119
Entity #15 | Chains: O
30S RIBOSOMAL PROTEIN S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 60 257 27
95 % 62 262 34
90 % 62 262 38
70 % 62 262 49
50 % 71 355 26
40 % 71 356 36
30 % 71 356 55
Entity #16 | Chains: P
30S RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 60 249 36
95 % 60 254 46
90 % 60 254 51
70 % 60 254 60
50 % 60 254 85
40 % 60 255 106
30 % 66 345 63
Entity #17 | Chains: Q
30S RIBOSOMAL PROTEIN S17 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 87 223
95 % 60 248 50
90 % 60 252 55
70 % 60 252 64
50 % 60 252 88
40 % 60 252 109
30 % 60 252 122
Entity #18 | Chains: R
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 51 598
95 % 54 219 63
90 % 54 219 68
70 % 54 219 78
50 % 54 219 108
40 % 54 219 130
30 % 54 219 142
Entity #19 | Chains: S
30S RIBOSOMAL PROTEIN S19 protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 61 257 26
95 % 61 257 37
90 % 61 257 43
70 % 61 257 52
50 % 67 345 31
40 % 67 345 42
30 % 67 345 60
Entity #2 | Chains: B
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 60 254 28
95 % 60 255 38
90 % 60 255 44
70 % 60 255 53
50 % 66 341 35
40 % 66 342 47
30 % 66 342 62
Entity #20 | Chains: T
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 51 370
95 % 60 253 47
90 % 60 253 52
70 % 60 253 62
50 % 60 253 87
40 % 60 253 108
30 % 60 253 121
Entity #21 | Chains: V
30S RIBOSOMAL PROTEIN THX protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 60 244 38
95 % 60 244 54
90 % 60 244 57
70 % 60 244 68
50 % 60 244 92
40 % 60 244 115
30 % 60 244 129
Entity #22 | Chains: W
5'-R(*UP*UP*CP*AP*AP*AP)-3' rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #23 | Chains: Z
5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*CP)-3' rna, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 54 218 44
95 % 54 218 64
90 % 54 218 69
70 % 54 218 79
50 % 56 269 79
40 % 56 269 98
30 % 56 269 112
Entity #4 | Chains: D
30S RIBOSOMAL PROTEIN S4 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 60 247 37
95 % 60 255 39
90 % 60 255 45
70 % 60 255 54
50 % 66 342 34
40 % 66 343 44
30 % 66 343 61
Entity #5 | Chains: E
30S RIBOSOMAL PROTEIN S5 protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 60 254 32
95 % 60 254 43
90 % 60 254 48
70 % 60 254 57
50 % 67 346 30
40 % 67 346 41
30 % 67 348 57
Entity #6 | Chains: F
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 61 259 24
95 % 67 265 33
90 % 67 265 36
70 % 67 265 44
50 % 67 265 82
40 % 67 265 101
30 % 73 304 78
Entity #7 | Chains: G
30S RIBOSOMAL PROTEIN S7 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 61 258 25
95 % 61 259 36
90 % 61 259 41
70 % 61 259 50
50 % 66 304 51
40 % 66 305 64
30 % 66 305 87
Entity #8 | Chains: H
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 61 254 29
95 % 61 254 40
90 % 61 258 42
70 % 61 258 51
50 % 69 348 29
40 % 70 350 39
30 % 76 425 33
Entity #9 | Chains: I
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 91 192
95 % 60 254 45
90 % 60 254 50
70 % 60 254 59
50 % 66 342 37
40 % 66 342 48
30 % 71 416 42

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.