Sequence Similarity Clusters for the Entities in PDB 4B3M

Entity #1 | Chains: A
16S RIBOSOMAL RNA rna, length: 1521 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S RIBOSOMAL PROTEIN S10 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 60 267 37
95 % 60 268 52
90 % 60 268 55
70 % 60 268 67
50 % 78 397 25
40 % 78 397 36
30 % 83 496 31
Entity #11 | Chains: K
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 60 269 35
95 % 60 269 48
90 % 60 269 51
70 % 60 269 62
50 % 72 391 33
40 % 79 493 18
30 % 79 493 33
Entity #12 | Chains: L
30S RIBOSOMAL PROTEIN S12 protein, length: 132 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 217 48
95 % 60 276 37
90 % 60 276 41
70 % 72 404 20
50 % 72 409 23
40 % 72 409 33
30 % 72 409 55
Entity #13 | Chains: M
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 60 270 33
95 % 60 270 45
90 % 60 270 49
70 % 60 270 59
50 % 72 396 31
40 % 72 396 44
30 % 77 497 34
Entity #14 | Chains: N
30S RIBOSOMAL PROTEIN S14 TYPE Z protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 60 268 36
95 % 60 268 53
90 % 60 268 56
70 % 60 270 60
50 % 60 270 89
40 % 60 270 111
30 % 60 270 123
Entity #15 | Chains: O
30S RIBOSOMAL PROTEIN S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 60 272 29
95 % 62 277 36
90 % 62 277 40
70 % 62 277 51
50 % 77 404 24
40 % 77 407 34
30 % 77 407 56
Entity #16 | Chains: P
30S RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 60 264 38
95 % 60 269 50
90 % 60 269 53
70 % 60 269 64
50 % 60 271 88
40 % 60 271 109
30 % 72 392 64
Entity #17 | Chains: Q
30S RIBOSOMAL PROTEIN S17 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 87 242
95 % 60 263 54
90 % 60 267 57
70 % 60 267 68
50 % 60 267 93
40 % 60 267 114
30 % 60 267 127
Entity #18 | Chains: R
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 51 684
95 % 54 234 62
90 % 54 234 66
70 % 54 234 78
50 % 54 234 107
40 % 54 234 132
30 % 54 234 141
Entity #19 | Chains: S
30S RIBOSOMAL PROTEIN S19 protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 61 272 28
95 % 61 272 41
90 % 61 272 46
70 % 61 272 56
50 % 73 396 27
40 % 73 399 38
30 % 73 399 57
Entity #2 | Chains: B
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 60 269 31
95 % 60 270 42
90 % 60 270 47
70 % 60 270 57
50 % 72 390 32
40 % 72 393 43
30 % 72 393 61
Entity #20 | Chains: T
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 51 480
95 % 60 268 51
90 % 60 268 54
70 % 60 268 66
50 % 60 268 91
40 % 60 268 112
30 % 60 268 124
Entity #21 | Chains: V
30S RIBOSOMAL PROTEIN THX protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 60 259 42
95 % 60 259 57
90 % 60 259 61
70 % 60 259 73
50 % 60 259 96
40 % 60 259 119
30 % 60 259 130
Entity #22 | Chains: W
5'-R(*UP*UP*CP*AP*AP*AP)-3' rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #23 | Chains: Z
5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*CP)-3' rna, length: 16 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 54 233 45
95 % 54 233 63
90 % 54 233 67
70 % 54 233 79
50 % 56 304 81
40 % 56 304 100
30 % 56 304 113
Entity #4 | Chains: D
30S RIBOSOMAL PROTEIN S4 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 60 262 39
95 % 60 270 43
90 % 60 270 48
70 % 60 270 58
50 % 72 392 30
40 % 72 395 41
30 % 72 395 60
Entity #5 | Chains: E
30S RIBOSOMAL PROTEIN S5 protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 60 269 34
95 % 60 269 47
90 % 60 269 50
70 % 60 269 61
50 % 73 396 29
40 % 73 396 42
30 % 73 398 59
Entity #6 | Chains: F
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 61 274 26
95 % 67 280 34
90 % 67 280 39
70 % 67 280 50
50 % 67 280 86
40 % 67 280 105
30 % 79 334 90
Entity #7 | Chains: G
30S RIBOSOMAL PROTEIN S7 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 61 273 27
95 % 61 274 39
90 % 61 274 43
70 % 61 274 54
50 % 72 338 68
40 % 72 341 78
30 % 72 341 91
Entity #8 | Chains: H
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 61 269 32
95 % 61 269 44
90 % 61 273 44
70 % 61 273 55
50 % 75 397 26
40 % 76 401 35
30 % 82 506 29
Entity #9 | Chains: I
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 91 207
95 % 60 269 49
90 % 60 269 52
70 % 60 269 63
50 % 72 391 34
40 % 72 391 45
30 % 77 494 35

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.