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Crystal structure of the 30S ribosome in complex with compound 1
Sequence Clustering and Redundancy Reduction Results
4B3M
Sequence Clusters for the Sequence Entities in PDB 4B3M
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1521 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 218 36
95% 46 219 50
90% 46 219 54
70% 46 219 65
50% 57 306 31
40% 57 306 42
30% 62 359 42
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 220 34
95% 46 220 46
90% 46 220 50
70% 46 220 60
50% 51 300 42
40% 58 360 31
30% 58 361 41
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 183 46
95% 46 227 27
90% 46 227 32
70% 51 311 21
50% 51 312 30
40% 51 312 41
30% 51 312 56
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 221 32
95% 46 221 44
90% 46 221 48
70% 46 221 58
50% 51 305 38
40% 51 305 50
30% 56 360 47
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 TYPE Z protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 219 35
95% 46 219 51
90% 46 219 55
70% 46 220 63
50% 46 220 92
40% 46 220 113
30% 46 220 126
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 223 28
95% 48 228 25
90% 48 228 29
70% 48 228 41
50% 56 313 28
40% 56 314 39
30% 56 314 55
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 215 37
95% 46 220 48
90% 46 220 52
70% 46 220 62
50% 46 220 91
40% 46 221 112
30% 51 303 69
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 80 223
95% 46 214 56
90% 46 218 57
70% 46 218 67
50% 46 218 94
40% 46 218 116
30% 46 218 128
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 49 517
95% 43 194 64
90% 43 194 66
70% 43 194 78
50% 43 194 111
40% 43 194 129
30% 43 194 148
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 47 223 27
95% 47 223 40
90% 47 223 45
70% 47 223 55
50% 52 303 35
40% 52 303 47
30% 52 303 65
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 220 30
95% 46 221 41
90% 46 221 46
70% 46 221 56
50% 51 299 41
40% 51 300 51
30% 51 300 68
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 49 367
95% 46 219 49
90% 46 219 53
70% 46 219 64
50% 46 219 93
40% 46 219 114
30% 46 219 127
Entity #21: Chains: V - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 210 39
95% 46 210 59
90% 46 210 62
70% 46 210 72
50% 46 210 98
40% 46 210 120
30% 46 210 133
Entity #22: Chains: W - 5'-R(*UP*UP*CP*AP*AP*AP)-3' rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: Z - 5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*CP)-3' rna, length: 16 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 43 193 45
95% 43 193 65
90% 43 193 67
70% 43 193 79
50% 44 236 78
40% 44 236 99
30% 44 236 119
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 213 38
95% 46 221 42
90% 46 221 47
70% 46 221 57
50% 51 300 39
40% 51 301 49
30% 51 301 67
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 161 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 46 220 33
95% 46 220 45
90% 46 220 49
70% 46 220 59
50% 52 304 34
40% 52 304 46
30% 52 306 64
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 47 225 24
95% 53 231 23
90% 53 231 28
70% 53 231 39
50% 53 231 82
40% 53 231 104
30% 59 270 77
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 47 224 26
95% 47 225 38
90% 47 225 42
70% 47 225 52
50% 52 268 50
40% 52 269 60
30% 52 269 80
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 47 220 31
95% 47 220 43
90% 47 224 43
70% 47 224 53
50% 54 306 33
40% 55 308 43
30% 61 364 40
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 90 166
95% 46 220 47
90% 46 220 51
70% 46 220 61
50% 51 300 43
40% 51 300 52
30% 56 355 48
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.