POP-OUT | CLOSE

An Information Portal to 108263 Biological Macromolecular Structures

Crystal structure of the 30S ribosome in complex with compound 1
Sequence Clustering and Redundancy Reduction Results
4B3M
Sequence Clusters for the Sequence Entities in PDB 4B3M
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1521 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 197 29
95% 38 198 45
90% 38 198 47
70% 38 198 59
50% 49 282 35
40% 49 282 45
30% 54 333 46
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 199 25
95% 38 199 40
90% 38 199 42
70% 38 199 54
50% 43 276 42
40% 50 333 35
30% 50 333 45
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 132 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 21 166 36
95% 38 206 31
90% 38 206 33
70% 43 288 24
50% 43 288 34
40% 43 288 44
30% 43 288 69
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 200 22
95% 38 200 38
90% 38 200 40
70% 38 200 51
50% 43 281 39
40% 43 281 50
30% 48 334 49
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 TYPE Z protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 198 26
95% 38 198 46
90% 38 198 48
70% 38 198 60
50% 38 198 92
40% 38 198 114
30% 38 198 138
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 202 20
95% 40 207 30
90% 40 207 32
70% 40 207 43
50% 48 289 33
40% 48 289 43
30% 48 289 67
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 194 30
95% 38 199 42
90% 38 199 44
70% 38 199 56
50% 38 199 89
40% 38 199 112
30% 43 279 76
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 10 80 222
95% 38 193 50
90% 38 197 49
70% 38 197 61
50% 38 197 93
40% 38 197 116
30% 38 197 139
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 2 49 508
95% 35 174 71
90% 35 174 75
70% 35 174 89
50% 35 174 130
40% 35 174 148
30% 35 174 164
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 202 19
95% 39 202 33
90% 39 202 36
70% 39 202 47
50% 44 279 38
40% 44 279 49
30% 44 279 73
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 199 23
95% 38 200 35
90% 38 200 38
70% 38 200 48
50% 38 200 88
40% 43 276 53
30% 43 276 75
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 49 358
95% 38 198 44
90% 38 198 46
70% 38 198 58
50% 38 198 91
40% 38 198 113
30% 38 198 137
Entity #21: Chains: V - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 189 32
95% 38 189 52
90% 38 189 55
70% 38 189 67
50% 38 189 112
40% 38 189 135
30% 38 189 153
Entity #22: Chains: W - 5'-R(*UP*UP*CP*AP*AP*AP)-3' rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: Z - 5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*CP)-3' rna, length: 16 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 173 48
95% 35 173 72
90% 35 173 76
70% 35 173 91
50% 36 214 76
40% 36 214 102
30% 36 214 122
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 192 31
95% 38 200 36
90% 38 200 39
70% 38 200 49
50% 43 276 40
40% 43 277 51
30% 43 277 74
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 161 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 38 199 24
95% 38 199 39
90% 38 199 41
70% 38 199 52
50% 44 280 37
40% 44 280 48
30% 44 282 72
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 204 17
95% 45 210 29
90% 45 210 31
70% 45 210 42
50% 45 210 82
40% 45 210 107
30% 51 248 87
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 203 18
95% 39 204 32
90% 39 204 34
70% 39 204 44
50% 44 246 54
40% 44 247 71
30% 44 247 94
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 39 199 21
95% 39 199 37
90% 39 203 35
70% 39 203 45
50% 46 282 36
40% 47 284 46
30% 53 338 44
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 6 90 158
95% 38 199 41
90% 38 199 43
70% 38 199 55
50% 43 276 41
40% 43 276 54
30% 48 329 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.