Sequence Similarity Clusters for the Entities in PDB 4B23

Entity #1 | Chains: A
MAG2, DNA-3-METHYLADENINE GLYCOSYLASE 2 protein, length: 232 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 14635
95 % 3 5 13771 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 3 5 13545
70 % 3 5 12724
50 % 3 5 11344
40 % 3 5 10279
30 % 3 5 8918
Entity #2 | Chains: X
5'-D(*GP*CP*TP*AP*CP*(3DR)P*AP*AP*TP*CP*GP)-3' dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: Y
5'-D(*CP*GP*AP*TP*TP*GP*GP*TP*AP*GP*CP)-3' dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.