Sequence Similarity Clusters for the Entities in PDB 4B23

Entity #1 | Chains: A
MAG2, DNA-3-METHYLADENINE GLYCOSYLASE 2 protein, length: 232 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 5 16575
95 % 3 5 15393 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 3 5 15072
70 % 3 5 14098
50 % 3 5 12457
40 % 3 5 11183
30 % 3 5 9505
Entity #2 | Chains: X
5'-D(*GP*CP*TP*AP*CP*(3DR)P*AP*AP*TP*CP*GP)-3' dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: Y
5'-D(*CP*GP*AP*TP*TP*GP*GP*TP*AP*GP*CP)-3' dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures