Sequence Similarity Clusters for the Entities in PDB 4B21

Entity #1 | Chains: A
PROBABLE DNA-3-METHYLADENINE GLYCOSYLASE 2 protein, length: 232 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 5 16541
95 % 1 5 15362 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 1 5 15042
70 % 1 5 14074
50 % 1 5 12436
40 % 1 5 11161
30 % 1 5 9489
Entity #2 | Chains: X
5'-D(*GP*CP*TP*AP*CP*3DRP*GP*AP*TP*CP*GP)-3' dna, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: Y
5'-D(*CP*GP*AP*TP*CP*GP*GP*TP*AP*GP)-3' dna, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures