Sequence Similarity Clusters for the Entities in PDB 4AYM

Entity #1 | Chains: A,B,E,F
COMPLEMENT FACTOR H protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 6 2646
95 % 6 6 3299 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 6 6 3346
70 % 6 6 3322
50 % 7 7 3116
40 % 8 8 2766
30 % 8 8 2590
Entity #2 | Chains: C,D
FACTOR H BINDING PROTEIN protein, length: 270 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 37419
95 % 2 2 22376 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 2 2 21730
70 % 12 14 2202
50 % 12 14 2186
40 % 12 14 2175
30 % 12 14 2081

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.