Sequence Similarity Clusters for the Entities in PDB 4AYI

Entity #1 | Chains: A,E
COMPLEMENT FACTOR H protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 3100
95 % 1 6 3404 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 1 6 3463
70 % 1 6 3396
50 % 2 7 3125
40 % 3 8 2780
30 % 18 58 545
Entity #2 | Chains: D
LIPOPROTEIN GNA1870 CCOMPND 7 protein, length: 270 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 26789
95 % 1 2 23571 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 2 22814
70 % 8 19 1454
50 % 8 19 1479
40 % 8 19 1469
30 % 8 19 1457

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures