Sequence Similarity Clusters for the Entities in PDB 4AYI

Entity #1 | Chains: A,E
COMPLEMENT FACTOR H protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 2709
95 % 1 6 3355 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 1 6 3406
70 % 1 6 3370
50 % 2 7 3153
40 % 3 8 2797
30 % 3 8 2622
Entity #2 | Chains: D
LIPOPROTEIN GNA1870 CCOMPND 7 protein, length: 270 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 57643
95 % 1 2 22631 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 2 21971
70 % 6 14 2232
50 % 6 14 2216
40 % 6 14 2204
30 % 6 14 2107

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures