Sequence Similarity Clusters for the Entities in PDB 4AYI

Entity #1 | Chains: A,E
COMPLEMENT FACTOR H protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 2737
95 % 1 6 3381 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 1 6 3432
70 % 1 6 3394
50 % 2 7 3179
40 % 3 8 2819
30 % 3 8 2647
Entity #2 | Chains: D
LIPOPROTEIN GNA1870 CCOMPND 7 protein, length: 270 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 58114
95 % 1 2 22842 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 2 22169
70 % 6 14 2257
50 % 6 14 2243
40 % 6 14 2230
30 % 6 14 2127

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures