Sequence Similarity Clusters for the Entities in PDB 4AYI

Entity #1 | Chains: A,E
COMPLEMENT FACTOR H protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 6 2646
95 % 1 6 3299 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 1 6 3346
70 % 1 6 3322
50 % 2 7 3116
40 % 3 8 2766
30 % 3 8 2590
Entity #2 | Chains: D
LIPOPROTEIN GNA1870 CCOMPND 7 protein, length: 270 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 56923
95 % 1 2 22376 Flexibility: No
Max RMSD: 0.2, Avg RMSD: 0.2
PDBFlex
90 % 1 2 21730
70 % 6 14 2202
50 % 6 14 2186
40 % 6 14 2175
30 % 6 14 2081

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.