Sequence Similarity Clusters for the Entities in PDB 4AYE

Entity #1 | Chains: A,B,E
COMPLEMENT FACTOR H protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 6 2774
95 % 5 6 3424 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 5 6 3476
70 % 5 6 3440
50 % 6 7 3214
40 % 7 8 2841
30 % 7 8 2668
Entity #2 | Chains: C,D,F
FACTOR H BINDING PROTEIN protein, length: 257 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 27697
95 % 7 9 3389 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 8 10 3061
70 % 11 15 2086
50 % 11 15 2090
40 % 11 15 2093
30 % 11 15 2009

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures