Sequence Similarity Clusters for the Entities in PDB 4AYD

Entity #1 | Chains: A,B,E
COMPLEMENT FACTOR H protein, length: 125 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 6 2646
95 % 2 6 3299 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 2 6 3346
70 % 2 6 3322
50 % 3 7 3116
40 % 4 8 2766
30 % 4 8 2590
Entity #2 | Chains: C,D,F
FACTOR H BINDING PROTEIN protein, length: 257 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 26881
95 % 3 8 3701 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.6
PDBFlex
90 % 4 9 3301
70 % 7 14 2202
50 % 7 14 2186
40 % 7 14 2175
30 % 7 14 2081

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.