POP-OUT | CLOSE

An Information Portal to 108957 Biological Macromolecular Structures

The NF-Y transcription factor is structurally and functionally a sequence specific histone
Sequence Clustering and Redundancy Reduction Results
4AWL
Sequence Clusters for the Sequence Entities in PDB 4AWL
Entity #1: Chains: A - NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA protein, length: 78 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 1 57998
95% 1 1 40379
90% 1 1 38586
70% 1 1 34305
50% 1 1 29520
40% 1 1 26105
30% 1 1 22065
Entity #2: Chains: B - NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA protein, length: 94 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 3 23255
95% 3 3 19390
90% 3 3 18819
70% 5 5 10970
50% 5 5 9853
40% 5 5 8992
30% 5 5 7875
Entity #3: Chains: C - NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA protein, length: 94 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 3 23212
95% 3 3 19354
90% 3 3 18782
70% 3 3 17291
50% 3 3 15144
40% 3 3 13564
30% 3 3 11659
Entity #4: Chains: I - HSP70 PROMOTER FRAGMENT dna, length: 25 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #5: Chains: J - HSP70 PROMOTER FRAGMENT dna, length: 25 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.