Sequence Similarity Clusters for the Entities in PDB 4AWL

Entity #1 | Chains: A
NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 63101
95 % 1 1 48499
90 % 1 1 46049
70 % 1 1 40404
50 % 1 1 34279
40 % 1 1 30035
30 % 1 1 25079
Entity #2 | Chains: B
NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA protein, length: 94 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 28067
95 % 3 3 24589 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 3 3 23768
70 % 5 5 14388
50 % 6 6 11345
40 % 6 6 10198
30 % 6 6 8710
Entity #3 | Chains: C
NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA protein, length: 94 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 29133
95 % 3 3 25468
90 % 3 3 24591
70 % 4 4 18643
50 % 4 4 16151
40 % 4 4 14311
30 % 6 6 8644
Entity #4 | Chains: I
HSP70 PROMOTER FRAGMENT dna, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: J
HSP70 PROMOTER FRAGMENT dna, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures