Sequence Similarity Clusters for the Entities in PDB 4AWL

Entity #1 | Chains: A
NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 70608
95 % 1 1 48938
90 % 1 1 46457
70 % 1 1 40812
50 % 1 1 34838
40 % 1 1 30708
30 % 1 1 25900
Entity #2 | Chains: B
NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA protein, length: 94 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 29213
95 % 3 3 24218
90 % 3 3 23445
70 % 5 5 13603
50 % 6 6 10848
40 % 6 6 9844
30 % 6 6 8570
Entity #3 | Chains: C
NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA protein, length: 94 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 29161
95 % 3 3 24173
90 % 3 3 23399
70 % 3 3 21319
50 % 4 4 15706
40 % 4 4 14004
30 % 4 4 11981
Entity #4 | Chains: I
HSP70 PROMOTER FRAGMENT dna, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: J
HSP70 PROMOTER FRAGMENT dna, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.