Sequence Similarity Clusters for the Entities in PDB 4AWL

Entity #1 | Chains: A
NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA protein, length: 78 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 72961
95 % 1 1 50488
90 % 1 1 47859
70 % 1 1 41935
50 % 1 1 35746
40 % 1 1 31497
30 % 1 1 26564
Entity #2 | Chains: B
NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA protein, length: 94 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 3 30294
95 % 3 3 25071 Flexibility: Low
Max RMSD: 1.0, Avg RMSD: 0.6
PDBFlex
90 % 3 3 24239
70 % 5 5 14093
50 % 6 6 11195
40 % 6 6 10147
30 % 6 6 8841
Entity #3 | Chains: C
NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT GAMMA protein, length: 94 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 30242
95 % 3 3 25027
90 % 3 3 24196
70 % 3 3 21990
50 % 4 4 16207
40 % 4 4 14436
30 % 4 4 12355
Entity #4 | Chains: I
HSP70 PROMOTER FRAGMENT dna, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #5 | Chains: J
HSP70 PROMOTER FRAGMENT dna, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures