Sequence Similarity Clusters for the Entities in PDB 4AWJ

Entity #1 | Chains: A,D,G,J
TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 2 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 27 39 220
95 % 27 39 279 Flexibility: No
Max RMSD: 1.7, Avg RMSD: 0.4
PDBFlex
90 % 27 39 290
70 % 27 39 336
50 % 27 39 403
40 % 27 39 428
30 % 27 39 426
Entity #2 | Chains: B,E,H,K
TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 1 protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 62 174
95 % 36 62 216 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.6
PDBFlex
90 % 36 62 226
70 % 36 62 243
50 % 36 62 268
40 % 36 63 293
30 % 36 63 305
Entity #3 | Chains: C,F,I,L
VON HIPPEL-LINDAU DISEASE TUMOR SUPPRESSOR protein, length: 163 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 30 47 198
95 % 30 47 253 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.5
PDBFlex
90 % 30 47 263
70 % 30 47 299
50 % 30 47 362
40 % 30 47 389
30 % 30 47 393

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures