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Structure of ribosome-apramycin complexes
Sequence Clustering and Redundancy Reduction Results
4AQY
Sequence Clusters for the Sequence Entities in PDB 4AQY
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 97 197 29
95% 97 198 46
90% 97 198 48
70% 97 198 61
50% 122 283 35
40% 122 283 45
30% 139 334 46
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 97 199 26
95% 97 199 40
90% 97 199 42
70% 97 199 54
50% 116 277 41
40% 135 335 35
30% 135 336 45
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 60 166 36
95% 97 206 32
90% 97 206 34
70% 116 288 24
50% 116 289 34
40% 116 289 44
30% 116 289 69
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 97 200 23
95% 97 200 38
90% 97 200 40
70% 97 200 51
50% 119 282 39
40% 119 282 50
30% 136 335 49
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 97 198 27
95% 97 198 47
90% 97 198 49
70% 97 199 57
50% 97 199 90
40% 97 199 113
30% 97 199 137
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 97 202 21
95% 101 207 31
90% 101 207 33
70% 101 207 43
50% 123 290 33
40% 123 291 43
30% 123 291 67
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 97 194 30
95% 97 199 42
90% 97 199 44
70% 97 199 56
50% 97 199 89
40% 97 200 112
30% 119 280 76
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 80 223
95% 96 193 50
90% 97 197 50
70% 97 197 62
50% 97 197 94
40% 97 197 117
30% 97 197 139
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 49 513
95% 91 174 72
90% 91 174 76
70% 91 174 90
50% 91 174 131
40% 91 174 149
30% 91 174 164
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 98 202 20
95% 98 202 34
90% 98 202 37
70% 98 202 47
50% 117 280 38
40% 117 280 49
30% 117 280 73
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 97 199 24
95% 97 200 35
90% 97 200 38
70% 97 200 48
50% 116 276 43
40% 116 277 52
30% 116 277 75
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 49 360
95% 97 198 45
90% 97 198 47
70% 97 198 60
50% 97 198 93
40% 97 198 115
30% 97 198 138
Entity #21: Chains: V - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 97 189 32
95% 97 189 52
90% 97 189 55
70% 97 189 68
50% 97 189 112
40% 97 189 135
30% 97 189 153
Entity #22: Chains: W - 5'-R(*UP*UP*CP*AP*AP*AP)-3' rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: Z - 5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3' rna, length: 15 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 90 173 48
95% 90 173 73
90% 90 173 77
70% 90 173 92
50% 95 214 78
40% 95 214 102
30% 95 214 123
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 192 31
95% 97 200 36
90% 97 200 39
70% 97 200 49
50% 116 277 40
40% 116 278 51
30% 116 278 74
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 161 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 97 199 25
95% 97 199 39
90% 97 199 41
70% 97 199 52
50% 117 281 37
40% 117 281 48
30% 117 283 72
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 99 204 18
95% 105 210 30
90% 105 210 32
70% 105 210 42
50% 105 210 83
40% 105 210 107
30% 121 249 87
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 98 203 19
95% 98 204 33
90% 98 204 35
70% 98 204 44
50% 117 247 56
40% 117 248 71
30% 117 248 95
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 97 199 22
95% 97 199 37
90% 98 203 36
70% 98 203 45
50% 119 283 36
40% 120 285 46
30% 138 339 44
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 90 159
95% 97 199 41
90% 97 199 43
70% 97 199 55
50% 116 277 42
40% 116 277 54
30% 133 330 50
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.