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Structure of ribosome-apramycin complexes
Sequence Clustering and Redundancy Reduction Results
4AQY
Sequence Clusters for the Sequence Entities in PDB 4AQY
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 109 217 36
95% 109 218 51
90% 109 218 55
70% 109 218 67
50% 135 306 31
40% 135 306 42
30% 152 368 40
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 109 219 34
95% 109 219 47
90% 109 219 51
70% 109 219 62
50% 129 300 42
40% 148 369 30
30% 148 370 38
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 70 182 46
95% 109 226 39
90% 109 226 43
70% 129 311 22
50% 129 312 30
40% 129 312 41
30% 129 312 57
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 109 220 32
95% 109 220 45
90% 109 220 49
70% 109 220 60
50% 132 305 39
40% 132 305 50
30% 149 369 44
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 109 218 35
95% 109 218 52
90% 109 218 56
70% 109 219 65
50% 109 219 92
40% 109 219 114
30% 109 219 128
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 109 222 29
95% 113 227 36
90% 113 227 40
70% 113 227 52
50% 136 313 29
40% 136 314 39
30% 136 314 54
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 109 214 37
95% 109 219 49
90% 109 219 53
70% 109 219 64
50% 109 219 91
40% 109 220 113
30% 132 303 70
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 80 226
95% 108 213 56
90% 109 217 58
70% 109 217 69
50% 109 217 94
40% 109 217 116
30% 109 217 130
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 49 530
95% 103 194 64
90% 103 194 66
70% 103 194 79
50% 103 194 113
40% 103 194 131
30% 103 194 150
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 110 222 28
95% 110 222 41
90% 110 222 46
70% 110 222 57
50% 130 303 38
40% 130 303 48
30% 130 303 67
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 109 219 30
95% 109 220 42
90% 109 220 47
70% 109 220 58
50% 129 299 41
40% 129 300 51
30% 129 300 69
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 49 371
95% 109 218 50
90% 109 218 54
70% 109 218 66
50% 109 218 93
40% 109 218 115
30% 109 218 129
Entity #21: Chains: V - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 109 209 40
95% 109 209 59
90% 109 209 62
70% 109 209 73
50% 109 209 100
40% 109 209 123
30% 109 209 135
Entity #22: Chains: W - 5'-R(*UP*UP*CP*AP*AP*AP)-3' rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: Z - 5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3' rna, length: 15 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 102 193 45
95% 102 193 65
90% 102 193 67
70% 102 193 80
50% 108 237 77
40% 108 237 102
30% 108 237 121
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 107 212 38
95% 109 220 43
90% 109 220 48
70% 109 220 59
50% 129 300 40
40% 129 301 49
30% 129 301 68
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 161 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 109 219 33
95% 109 219 46
90% 109 219 50
70% 109 219 61
50% 130 304 37
40% 130 304 47
30% 130 306 63
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 111 224 25
95% 117 230 24
90% 117 230 29
70% 117 230 41
50% 117 230 83
40% 117 230 108
30% 133 269 80
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 110 223 27
95% 110 224 40
90% 110 224 44
70% 110 224 55
50% 129 267 51
40% 129 268 64
30% 129 268 83
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 109 219 31
95% 109 219 44
90% 110 223 45
70% 110 223 56
50% 132 306 35
40% 133 308 43
30% 151 373 37
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 89 180
95% 109 219 48
90% 109 219 52
70% 109 219 63
50% 129 300 43
40% 129 300 52
30% 146 364 46
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.