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An Information Portal to 106082 Biological Macromolecular Structures

Structure of ribosome-apramycin complexes
Sequence Clustering and Redundancy Reduction Results
4AQY
Sequence Clusters for the Sequence Entities in PDB 4AQY
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 193 28
95% 95 194 45
90% 95 194 47
70% 95 194 58
50% 119 275 34
40% 119 275 45
30% 119 280 65
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 195 26
95% 95 195 41
90% 95 195 43
70% 95 195 54
50% 113 269 41
40% 132 322 35
30% 132 322 44
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 60 164 35
95% 95 202 32
90% 95 202 33
70% 113 281 23
50% 113 281 33
40% 113 281 44
30% 113 281 68
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 196 23
95% 95 196 39
90% 95 196 41
70% 95 196 52
50% 116 274 38
40% 116 274 50
30% 133 323 47
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 194 27
95% 95 194 46
90% 95 194 48
70% 95 194 59
50% 95 194 92
40% 95 194 115
30% 95 194 137
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 198 21
95% 99 203 30
90% 99 203 31
70% 99 203 43
50% 120 282 32
40% 120 282 42
30% 120 282 67
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 190 29
95% 95 195 43
90% 95 195 45
70% 95 195 56
50% 95 195 89
40% 95 195 113
30% 116 272 76
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 79 223
95% 94 189 48
90% 95 193 50
70% 95 193 61
50% 95 193 95
40% 95 193 120
30% 95 193 139
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 49 494
95% 89 172 58
90% 89 172 62
70% 89 172 76
50% 89 172 111
40% 89 172 137
30% 89 172 156
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 89 174 36
95% 89 174 57
90% 89 174 61
70% 89 174 75
50% 114 272 37
40% 114 272 49
30% 114 272 72
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 195 24
95% 95 196 36
90% 95 196 39
70% 95 196 50
50% 95 196 87
40% 113 269 52
30% 113 269 75
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 48 363
95% 95 194 44
90% 95 194 46
70% 95 194 57
50% 95 194 91
40% 95 194 114
30% 95 194 136
Entity #21: Chains: V - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 185 32
95% 95 185 51
90% 95 185 54
70% 95 185 65
50% 95 185 101
40% 95 185 127
30% 95 185 147
Entity #22: Chains: W - 5'-R(*UP*UP*CP*AP*AP*AP)-3' rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: Z - 5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3' rna, length: 15 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 88 171 37
95% 88 171 59
90% 88 171 63
70% 88 171 77
50% 93 210 73
40% 93 210 97
30% 93 210 120
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 93 188 30
95% 95 196 37
90% 95 196 40
70% 95 196 51
50% 113 269 39
40% 113 270 51
30% 113 270 73
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 161 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 195 25
95% 95 195 40
90% 95 195 42
70% 95 195 53
50% 114 273 36
40% 114 273 48
30% 114 275 70
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 97 200 17
95% 103 206 29
90% 103 206 30
70% 103 206 40
50% 103 206 80
40% 103 206 105
30% 118 243 90
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 96 199 20
95% 96 200 33
90% 96 200 34
70% 96 200 47
50% 114 241 54
40% 114 242 70
30% 114 242 94
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 95 195 22
95% 95 195 38
90% 96 199 35
70% 96 199 48
50% 116 275 35
40% 117 277 46
30% 135 327 43
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 89 144
95% 95 195 42
90% 95 195 44
70% 95 195 55
50% 113 269 40
40% 113 269 53
30% 130 318 49
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.