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Structure of ribosome-apramycin complexes
Sequence Clustering and Redundancy Reduction Results
4AQY
Sequence Clusters for the Sequence Entities in PDB 4AQY
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 98 204 25
95% 98 205 45
90% 98 205 47
70% 98 205 57
50% 123 290 35
40% 123 290 45
30% 140 342 46
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 98 206 23
95% 98 206 41
90% 98 206 43
70% 98 206 52
50% 117 284 41
40% 136 343 34
30% 136 344 45
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 61 172 33
95% 98 213 32
90% 98 213 35
70% 117 295 24
50% 117 296 34
40% 117 296 44
30% 117 296 67
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 98 207 20
95% 98 207 39
90% 98 207 41
70% 98 207 50
50% 120 289 39
40% 120 289 49
30% 137 343 48
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 98 205 24
95% 98 205 46
90% 98 205 48
70% 98 206 55
50% 98 206 85
40% 98 206 110
30% 98 206 129
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 98 209 18
95% 102 214 30
90% 102 214 33
70% 102 214 43
50% 124 297 33
40% 124 298 43
30% 124 298 65
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 98 201 29
95% 98 206 43
90% 98 206 45
70% 98 206 54
50% 98 206 84
40% 98 207 109
30% 120 287 74
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 80 223
95% 97 200 47
90% 98 204 49
70% 98 204 58
50% 98 204 87
40% 98 204 112
30% 98 204 131
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 49 515
95% 92 180 55
90% 92 180 57
70% 92 180 72
50% 92 180 119
40% 92 180 143
30% 92 180 159
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 99 209 17
95% 99 209 34
90% 99 209 38
70% 99 209 47
50% 118 287 38
40% 118 287 48
30% 118 287 71
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 98 206 21
95% 98 207 36
90% 98 207 39
70% 98 207 48
50% 117 283 43
40% 117 284 51
30% 117 284 73
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 49 362
95% 98 205 44
90% 98 205 46
70% 98 205 56
50% 98 205 86
40% 98 205 111
30% 98 205 130
Entity #21: Chains: V - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 98 196 32
95% 98 196 51
90% 98 196 53
70% 98 196 64
50% 98 196 97
40% 98 196 120
30% 98 196 143
Entity #22: Chains: W - 5'-R(*UP*UP*CP*AP*AP*AP)-3' rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: Z - 5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3' rna, length: 15 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 179 36
95% 91 179 56
90% 91 179 59
70% 91 179 73
50% 96 220 77
40% 96 220 101
30% 96 220 120
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 96 199 30
95% 98 207 37
90% 98 207 40
70% 98 207 49
50% 117 284 40
40% 117 285 50
30% 117 285 72
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 161 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 98 206 22
95% 98 206 40
90% 98 206 42
70% 98 206 51
50% 118 288 37
40% 118 288 47
30% 118 290 69
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 100 211 15
95% 106 217 28
90% 106 217 31
70% 106 217 41
50% 106 217 78
40% 106 217 102
30% 122 256 85
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 99 210 16
95% 99 211 33
90% 99 211 36
70% 99 211 45
50% 118 254 52
40% 118 255 67
30% 118 255 88
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 98 206 19
95% 98 206 38
90% 99 210 37
70% 99 210 46
50% 120 290 36
40% 121 292 46
30% 139 347 44
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 90 160
95% 98 206 42
90% 98 206 44
70% 98 206 53
50% 117 284 42
40% 117 284 52
30% 134 338 49
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.