Sequence Similarity Clusters for the Entities in PDB 4AQY

Entity #1 | Chains: A
16S RIBOSOMAL RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S RIBOSOMAL PROTEIN S10 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 139 267 38
95 % 139 268 54
90 % 139 268 57
70 % 139 268 69
50 % 172 399 26
40 % 172 399 37
30 % 192 498 32
Entity #11 | Chains: K
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 139 269 36
95 % 139 269 50
90 % 139 269 53
70 % 139 269 64
50 % 166 392 35
40 % 188 497 19
30 % 188 497 33
Entity #12 | Chains: L
30S RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 87 217 50
95 % 139 276 40
90 % 139 276 44
70 % 166 405 22
50 % 166 410 25
40 % 166 410 35
30 % 166 410 55
Entity #13 | Chains: M
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 139 270 34
95 % 139 270 47
90 % 139 270 51
70 % 139 270 61
50 % 169 397 33
40 % 169 397 46
30 % 189 498 36
Entity #14 | Chains: N
30S RIBOSOMAL PROTEIN S14 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 139 268 37
95 % 139 268 55
90 % 139 268 58
70 % 139 270 62
50 % 139 270 90
40 % 139 270 112
30 % 139 270 123
Entity #15 | Chains: O
30S RIBOSOMAL PROTEIN S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 139 272 30
95 % 143 277 39
90 % 143 277 43
70 % 143 277 55
50 % 173 405 27
40 % 173 408 36
30 % 173 408 56
Entity #16 | Chains: P
30S RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 139 264 39
95 % 139 269 52
90 % 139 269 55
70 % 139 269 66
50 % 139 271 89
40 % 139 271 110
30 % 169 393 64
Entity #17 | Chains: Q
30S RIBOSOMAL PROTEIN S17 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 87 246
95 % 138 263 56
90 % 139 267 59
70 % 139 267 70
50 % 139 267 94
40 % 139 267 115
30 % 139 267 127
Entity #18 | Chains: R
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 51 692
95 % 125 234 64
90 % 125 234 68
70 % 125 234 80
50 % 125 234 108
40 % 125 234 133
30 % 125 234 142
Entity #19 | Chains: S
30S RIBOSOMAL PROTEIN S19 protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 140 272 29
95 % 140 272 43
90 % 140 272 48
70 % 140 272 58
50 % 167 397 30
40 % 167 400 41
30 % 167 400 58
Entity #2 | Chains: B
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 139 269 32
95 % 139 270 44
90 % 139 270 49
70 % 139 270 59
50 % 166 391 34
40 % 166 394 45
30 % 166 394 62
Entity #20 | Chains: T
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 51 487
95 % 139 268 53
90 % 139 268 56
70 % 139 268 68
50 % 139 268 92
40 % 139 268 113
30 % 139 268 124
Entity #21 | Chains: V
30S RIBOSOMAL PROTEIN THX protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 139 259 43
95 % 139 259 59
90 % 139 259 63
70 % 139 259 75
50 % 139 259 97
40 % 139 259 120
30 % 139 259 130
Entity #22 | Chains: W
5'-R(*UP*UP*CP*AP*AP*AP)-3' rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #23 | Chains: Z
5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3' rna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 124 233 47
95 % 124 233 65
90 % 124 233 69
70 % 124 233 81
50 % 130 305 84
40 % 130 305 102
30 % 130 305 113
Entity #4 | Chains: D
30S RIBOSOMAL PROTEIN S4 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 137 262 40
95 % 139 270 45
90 % 139 270 50
70 % 139 270 60
50 % 166 393 32
40 % 166 396 43
30 % 166 396 61
Entity #5 | Chains: E
30S RIBOSOMAL PROTEIN S5 protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 139 269 35
95 % 139 269 49
90 % 139 269 52
70 % 139 269 63
50 % 167 397 31
40 % 167 397 44
30 % 167 399 59
Entity #6 | Chains: F
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 141 274 27
95 % 147 280 36
90 % 147 280 41
70 % 147 280 52
50 % 147 280 87
40 % 147 280 106
30 % 170 334 90
Entity #7 | Chains: G
30S RIBOSOMAL PROTEIN S7 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 140 273 28
95 % 140 274 41
90 % 140 274 45
70 % 140 274 56
50 % 166 338 71
40 % 166 341 79
30 % 166 341 93
Entity #8 | Chains: H
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 139 269 33
95 % 139 269 46
90 % 140 273 46
70 % 140 273 57
50 % 169 398 29
40 % 170 402 38
30 % 192 510 30
Entity #9 | Chains: I
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 91 211
95 % 139 269 51
90 % 139 269 54
70 % 139 269 65
50 % 166 392 36
40 % 166 392 47
30 % 186 497 35

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.