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Structure of ribsome-apramycin complexes
Sequence Clustering and Redundancy Reduction Results
4AQY
Sequence Clusters for the Sequence Entities in PDB 4AQY
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 108 252 29
95% 108 254 48
90% 108 254 51
70% 108 254 63
50% 151 369 34
40% 151 369 48
30% 151 374 67
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 108 255 27
95% 108 255 44
90% 108 255 47
70% 108 255 59
50% 145 363 42
40% 149 403 39
30% 149 403 53
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 73 224 37
95% 108 262 36
90% 108 262 38
70% 145 375 24
50% 145 375 33
40% 145 375 47
30% 145 375 71
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 108 256 24
95% 108 256 42
90% 108 256 45
70% 108 256 57
50% 145 365 39
40% 145 365 53
30% 147 401 57
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 108 254 28
95% 108 254 49
90% 108 254 52
70% 108 254 64
50% 108 254 99
40% 108 254 124
30% 108 254 144
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 108 258 21
95% 112 263 35
90% 112 263 37
70% 112 263 48
50% 152 376 32
40% 152 376 45
30% 152 376 69
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 108 250 31
95% 108 255 46
90% 108 255 49
70% 108 255 61
50% 108 255 97
40% 108 255 122
30% 145 363 78
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 92 219
95% 107 249 51
90% 108 253 53
70% 108 253 65
50% 108 253 100
40% 108 253 126
30% 108 253 146
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 49 463
95% 102 221 64
90% 102 221 68
70% 102 221 81
50% 102 221 116
40% 102 221 144
30% 102 221 166
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 102 223 38
95% 102 223 63
90% 102 223 67
70% 102 223 80
50% 146 366 38
40% 146 366 52
30% 146 366 75
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 108 255 25
95% 108 256 39
90% 108 256 43
70% 108 256 55
50% 108 256 96
40% 145 363 55
30% 145 363 77
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 61 359
95% 108 254 47
90% 108 254 50
70% 108 254 62
50% 108 254 98
40% 108 254 123
30% 108 254 143
Entity #21: Chains: V - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 108 238 34
95% 108 238 55
90% 108 238 59
70% 108 238 71
50% 108 238 110
40% 108 238 133
30% 108 238 153
Entity #22: Chains: W - 5'-R(*UP*UP*CP*AP*AP*AP)-3' rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: Z - 5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3' rna, length: 15 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 101 219 39
95% 101 219 66
90% 101 219 70
70% 101 219 83
50% 116 282 81
40% 116 282 101
30% 116 282 123
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 106 248 32
95% 108 256 40
90% 108 256 44
70% 108 256 56
50% 145 363 40
40% 145 364 54
30% 145 364 76
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 161 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 108 255 26
95% 108 255 43
90% 108 255 46
70% 108 255 58
50% 146 367 37
40% 146 367 51
30% 146 369 72
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 110 260 18
95% 116 266 34
90% 116 266 36
70% 116 266 47
50% 116 266 88
40% 116 266 112
30% 140 313 95
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 109 259 20
95% 109 260 37
90% 109 260 39
70% 109 260 51
50% 133 308 57
40% 133 309 74
30% 133 309 97
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 108 255 23
95% 108 255 41
90% 109 259 40
70% 109 259 52
50% 148 369 36
40% 149 371 49
30% 152 408 50
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 113 134
95% 108 255 45
90% 108 255 48
70% 108 255 60
50% 145 363 41
40% 145 363 56
30% 147 399 59
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.