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Structure of ribosome-apramycin complexes
Sequence Clustering and Redundancy Reduction Results
4AQY
Sequence Clusters for the Sequence Entities in PDB 4AQY
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 187 28
95% 91 188 47
90% 91 188 50
70% 91 188 60
50% 115 269 34
40% 115 269 45
30% 115 274 65
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 189 26
95% 91 189 43
90% 91 189 46
70% 91 189 56
50% 109 263 41
40% 128 316 35
30% 128 316 45
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 56 158 35
95% 91 196 35
90% 91 196 37
70% 109 275 24
50% 109 275 33
40% 109 275 44
30% 109 275 69
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 190 23
95% 91 190 41
90% 91 190 44
70% 91 190 54
50% 112 268 38
40% 112 268 51
30% 129 317 48
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 188 27
95% 91 188 48
90% 91 188 51
70% 91 188 61
50% 91 188 94
40% 91 188 119
30% 91 188 142
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 192 21
95% 95 197 33
90% 95 197 35
70% 95 197 47
50% 116 276 32
40% 116 276 43
30% 116 276 66
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 184 29
95% 91 189 45
90% 91 189 48
70% 91 189 58
50% 91 189 92
40% 91 189 117
30% 112 266 76
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 79 222
95% 90 183 49
90% 91 187 52
70% 91 187 62
50% 91 187 95
40% 91 187 120
30% 91 187 143
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 49 491
95% 85 168 61
90% 85 168 64
70% 85 168 80
50% 85 168 117
40% 85 168 139
30% 85 168 161
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 85 170 37
95% 85 170 59
90% 85 170 63
70% 85 170 78
50% 110 266 37
40% 110 266 50
30% 110 266 73
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 189 24
95% 91 190 38
90% 91 190 42
70% 91 190 52
50% 91 190 91
40% 109 263 54
30% 109 263 75
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 48 365
95% 91 188 46
90% 91 188 49
70% 91 188 59
50% 91 188 93
40% 91 188 118
30% 91 188 141
Entity #21: Chains: V - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 179 34
95% 91 179 54
90% 91 179 56
70% 91 179 69
50% 91 179 105
40% 91 179 132
30% 91 179 151
Entity #22: Chains: W - 5'-R(*UP*UP*CP*AP*AP*AP)-3' rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: Z - 5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3' rna, length: 15 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 84 166 38
95% 84 166 63
90% 84 166 66
70% 84 166 82
50% 89 205 77
40% 89 205 101
30% 89 205 120
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 89 182 31
95% 91 190 39
90% 91 190 43
70% 91 190 53
50% 109 263 39
40% 109 264 52
30% 109 264 74
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 161 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 189 25
95% 91 189 42
90% 91 189 45
70% 91 189 55
50% 110 267 36
40% 110 267 49
30% 110 269 72
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 93 194 19
95% 99 200 29
90% 99 200 30
70% 99 200 45
50% 99 200 86
40% 99 200 108
30% 114 237 93
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 92 193 20
95% 92 194 36
90% 92 194 38
70% 92 194 50
50% 110 235 56
40% 110 236 73
30% 110 236 96
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 91 189 22
95% 91 189 40
90% 92 193 39
70% 92 193 51
50% 112 269 35
40% 113 271 46
30% 131 321 44
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 87 159
95% 91 189 44
90% 91 189 47
70% 91 189 57
50% 109 263 40
40% 109 263 55
30% 126 312 51
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.