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Structure of ribosome-apramycin complexes
Sequence Clustering and Redundancy Reduction Results
4AQY
Sequence Clusters for the Sequence Entities in PDB 4AQY
Entity #1: Chains: A - 16S RIBOSOMAL RNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 117 265 27
95% 117 267 47
90% 117 267 49
70% 117 267 59
50% 160 382 34
40% 160 382 45
30% 160 387 65
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 117 268 25
95% 117 268 43
90% 117 268 45
70% 117 268 55
50% 154 376 41
40% 178 436 38
30% 178 436 51
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 82 237 35
95% 117 275 35
90% 117 275 37
70% 154 388 24
50% 154 388 33
40% 154 388 44
30% 154 388 68
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 117 269 22
95% 117 269 41
90% 117 269 43
70% 117 269 53
50% 154 378 38
40% 154 378 51
30% 176 434 54
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 protein, length: 60 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 117 267 26
95% 117 267 48
90% 117 267 50
70% 117 267 60
50% 117 267 93
40% 117 267 119
30% 117 267 140
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 117 271 20
95% 121 276 32
90% 121 276 34
70% 121 276 47
50% 161 389 32
40% 161 389 43
30% 161 389 67
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 117 263 28
95% 117 268 45
90% 117 268 47
70% 117 268 57
50% 117 268 91
40% 117 268 117
30% 154 376 76
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 104 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 92 220
95% 116 262 49
90% 117 266 51
70% 117 266 61
50% 117 266 94
40% 117 266 120
30% 117 266 142
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 49 466
95% 111 232 61
90% 111 232 64
70% 111 232 78
50% 111 232 113
40% 111 232 138
30% 111 232 159
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 92 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 111 234 37
95% 111 234 59
90% 111 234 63
70% 111 234 77
50% 155 379 37
40% 155 379 49
30% 155 379 72
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 117 268 23
95% 117 269 38
90% 117 269 41
70% 117 269 51
50% 117 269 90
40% 154 376 53
30% 154 376 75
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 15 61 362
95% 117 267 46
90% 117 267 48
70% 117 267 58
50% 117 267 92
40% 117 267 118
30% 117 267 139
Entity #21: Chains: V - 30S RIBOSOMAL PROTEIN THX protein, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 117 249 33
95% 117 249 52
90% 117 249 55
70% 117 249 66
50% 117 249 103
40% 117 249 130
30% 117 249 150
Entity #22: Chains: W - 5'-R(*UP*UP*CP*AP*AP*AP)-3' rna, length: 6 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: Z - 5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3' rna, length: 15 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 110 230 38
95% 110 230 62
90% 110 230 65
70% 110 230 79
50% 125 293 73
40% 125 293 98
30% 125 293 119
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 208 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 115 261 29
95% 117 269 39
90% 117 269 42
70% 117 269 52
50% 154 376 39
40% 154 377 52
30% 154 377 74
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 161 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 117 268 24
95% 117 268 42
90% 117 268 44
70% 117 268 54
50% 155 380 36
40% 155 380 48
30% 155 382 71
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 119 273 18
95% 125 279 29
90% 125 279 30
70% 125 279 44
50% 125 279 82
40% 125 279 106
30% 149 326 94
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 118 272 19
95% 118 273 36
90% 118 273 38
70% 118 273 49
50% 142 321 56
40% 142 322 73
30% 142 322 96
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 117 268 21
95% 117 268 40
90% 118 272 39
70% 118 272 50
50% 157 382 35
40% 158 384 46
30% 181 441 47
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 113 138
95% 117 268 44
90% 117 268 46
70% 117 268 56
50% 154 376 40
40% 154 376 54
30% 176 432 56
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.