Sequence Similarity Clusters for the Entities in PDB 4AQY

Entity #1 | Chains: A
16S RIBOSOMAL RNA rna, length: 1522 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #10 | Chains: J
30S RIBOSOMAL PROTEIN S10 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 137 254 36
95 % 137 255 49
90 % 137 255 54
70 % 137 255 64
50 % 170 362 28
40 % 170 362 38
30 % 189 436 36
Entity #11 | Chains: K
30S RIBOSOMAL PROTEIN S11 protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 137 256 34
95 % 137 256 45
90 % 137 256 50
70 % 137 256 59
50 % 164 356 35
40 % 185 438 20
30 % 185 439 34
Entity #12 | Chains: L
30S RIBOSOMAL PROTEIN S12 protein, length: 135 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 87 208 46
95 % 137 263 36
90 % 137 263 41
70 % 164 367 22
50 % 164 368 27
40 % 164 368 37
30 % 164 368 57
Entity #13 | Chains: M
30S RIBOSOMAL PROTEIN S13 protein, length: 126 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 137 257 32
95 % 137 257 43
90 % 137 257 48
70 % 137 257 57
50 % 167 361 32
40 % 167 361 43
30 % 186 437 39
Entity #14 | Chains: N
30S RIBOSOMAL PROTEIN S14 protein, length: 60 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 137 255 35
95 % 137 255 50
90 % 137 255 55
70 % 137 256 62
50 % 137 256 88
40 % 137 256 108
30 % 137 256 120
Entity #15 | Chains: O
30S RIBOSOMAL PROTEIN S15 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 137 259 29
95 % 141 264 35
90 % 141 264 40
70 % 141 264 50
50 % 171 369 26
40 % 171 370 36
30 % 171 370 56
Entity #16 | Chains: P
30S RIBOSOMAL PROTEIN S16 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 137 251 37
95 % 137 256 47
90 % 137 256 52
70 % 137 256 61
50 % 137 256 87
40 % 137 257 107
30 % 167 359 63
Entity #17 | Chains: Q
30S RIBOSOMAL PROTEIN S17 protein, length: 104 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 36 87 225
95 % 136 250 51
90 % 137 254 56
70 % 137 254 66
50 % 137 254 90
40 % 137 254 111
30 % 137 254 123
Entity #18 | Chains: R
30S RIBOSOMAL PROTEIN S18 protein, length: 88 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 51 616
95 % 123 221 64
90 % 123 221 69
70 % 123 221 79
50 % 123 221 111
40 % 123 221 132
30 % 123 221 143
Entity #19 | Chains: S
30S RIBOSOMAL PROTEIN S19 protein, length: 92 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 138 259 27
95 % 138 259 38
90 % 138 259 44
70 % 138 259 53
50 % 165 359 31
40 % 165 359 41
30 % 165 359 59
Entity #2 | Chains: B
30S RIBOSOMAL PROTEIN S2 protein, length: 256 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 137 256 30
95 % 137 257 39
90 % 137 257 45
70 % 137 257 54
50 % 164 355 34
40 % 164 356 44
30 % 164 356 62
Entity #20 | Chains: T
30S RIBOSOMAL PROTEIN S20 protein, length: 106 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 51 384
95 % 137 255 48
90 % 137 255 53
70 % 137 255 63
50 % 137 255 89
40 % 137 255 110
30 % 137 255 122
Entity #21 | Chains: V
30S RIBOSOMAL PROTEIN THX protein, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 137 246 39
95 % 137 246 54
90 % 137 246 59
70 % 137 246 69
50 % 137 246 95
40 % 137 246 118
30 % 137 246 131
Entity #22 | Chains: W
5'-R(*UP*UP*CP*AP*AP*AP)-3' rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #23 | Chains: Z
5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3' rna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: C
30S RIBOSOMAL PROTEIN S3 protein, length: 239 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 122 220 45
95 % 122 220 65
90 % 122 220 70
70 % 122 220 80
50 % 128 276 78
40 % 128 276 100
30 % 128 276 112
Entity #4 | Chains: D
30S RIBOSOMAL PROTEIN S4 protein, length: 208 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 135 249 38
95 % 137 257 40
90 % 137 257 46
70 % 137 257 55
50 % 164 356 33
40 % 164 357 42
30 % 164 357 61
Entity #5 | Chains: E
30S RIBOSOMAL PROTEIN S5 protein, length: 161 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 137 256 33
95 % 137 256 44
90 % 137 256 49
70 % 137 256 58
50 % 165 360 30
40 % 165 360 40
30 % 165 362 58
Entity #6 | Chains: F
30S RIBOSOMAL PROTEIN S6 protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 139 261 25
95 % 145 267 34
90 % 145 267 37
70 % 145 267 46
50 % 145 267 84
40 % 145 267 103
30 % 168 313 77
Entity #7 | Chains: G
30S RIBOSOMAL PROTEIN S7 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 138 260 26
95 % 138 261 37
90 % 138 261 42
70 % 138 261 51
50 % 164 313 54
40 % 164 314 68
30 % 164 314 89
Entity #8 | Chains: H
30S RIBOSOMAL PROTEIN S8 protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 137 256 31
95 % 137 256 42
90 % 138 260 43
70 % 138 260 52
50 % 167 362 29
40 % 168 364 39
30 % 189 443 33
Entity #9 | Chains: I
30S RIBOSOMAL PROTEIN S9 protein, length: 128 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 91 198
95 % 137 256 46
90 % 137 256 51
70 % 137 256 60
50 % 164 356 36
40 % 164 356 46
30 % 183 433 40

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.