Sequence Similarity Clusters for the Entities in PDB 4APL

Entity #1 | Chains: A,B,D,E
APICAL MEMBRANE ANTIGEN 1 protein, length: 431 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 24939
95 % 1 1 22052 Flexibility: Low
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 1 1 21379
70 % 7 7 3379
50 % 7 7 3299
40 % 8 9 1873
30 % 30 32 947

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures