Sequence Similarity Clusters for the Entities in PDB 4AOQ

Entity #1 | Chains: A,B,C
CATIONIC TRYPSIN protein, length: 223 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 350 405 37
95 % 393 464 20 Flexibility: No
Max RMSD: 3.0, Avg RMSD: 0.5
PDBFlex
90 % 393 464 21
70 % 437 548 19
50 % 487 699 14
40 % 970 1721 4
30 % 1034 1871 6
Entity #2 | Chains: D,E,F
TRYPSIN INHIBITOR 3 protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 30836
95 % 2 2 13827 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.3
PDBFlex
90 % 2 2 13609
70 % 2 2 12787
50 % 2 2 11403
40 % 2 2 10343
30 % 2 2 9021

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures