Sequence Similarity Clusters for the Entities in PDB 4AMA

Entity #1 | Chains: A,B,C,D
N-ACETYLNEURAMINATE LYASE protein, length: 298 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 8 1499
95 % 7 9 1546 Flexibility: Low
Max RMSD: 2.1, Avg RMSD: 0.5
PDBFlex
90 % 7 9 1572
70 % 7 9 1580
50 % 20 22 620
40 % 22 24 602
30 % 146 168 110

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures