Sequence Similarity Clusters for the Entities in PDB 4AKD

Entity #1 | Chains: A,B,C,D
MANNOSE-SPECIFIC LECTIN KM+ protein, length: 150 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 20400
95 % 1 1 18441 Flexibility: No
Max RMSD: 0.5, Avg RMSD: 0.4
PDBFlex
90 % 4 9 1294
70 % 6 11 1111
50 % 34 49 270
40 % 34 49 299
30 % 64 93 209

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures