Sequence Similarity Clusters for the Entities in PDB 4AKC

Entity #1 | Chains: A,C,E,G
AGGLUTININ ALPHA CHAIN protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 9979
95 % 27 31 392 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.3
PDBFlex
90 % 28 32 384
70 % 31 36 384
50 % 39 49 274
40 % 39 49 289
30 % 71 93 199
Entity #2 | Chains: B,D,F,H
AGGLUTININ BETA-4 CHAIN protein, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 3651
95 % 3 3 4446
90 % 10 14 1022
70 % 10 14 1061
50 % 10 14 1105
40 % 10 14 1116
30 % 10 14 1098

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures