Sequence Similarity Clusters for the Entities in PDB 4AKC

Entity #1 | Chains: A,C,E,G
AGGLUTININ ALPHA CHAIN protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 9584
95 % 27 31 359 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.3
PDBFlex
90 % 28 32 366
70 % 31 36 373
50 % 39 49 265
40 % 39 49 280
30 % 71 93 195
Entity #2 | Chains: B,D,F,H
AGGLUTININ BETA-4 CHAIN protein, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 3 3507
95 % 3 3 4291
90 % 10 14 994
70 % 10 14 1030
50 % 10 14 1069
40 % 10 14 1077
30 % 10 14 1058

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.