Sequence Similarity Clusters for the Entities in PDB 4AKB

Entity #1 | Chains: A,C,E,G
AGGLUTININ ALPHA CHAIN protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 9573
95 % 18 31 357 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.3
PDBFlex
90 % 19 32 364
70 % 20 36 370
50 % 25 49 264
40 % 25 49 280
30 % 45 93 195
Entity #2 | Chains: B,D,F,H
AGGLUTININ BETA-4 CHAIN protein, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 3503
95 % 2 3 4285
90 % 6 14 992
70 % 6 14 1030
50 % 6 14 1069
40 % 6 14 1077
30 % 6 14 1057

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.