Sequence Similarity Clusters for the Entities in PDB 4AKB

Entity #1 | Chains: A,C,E,G
AGGLUTININ ALPHA CHAIN protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 9216
95 % 18 31 341 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.3
PDBFlex
90 % 19 32 352
70 % 20 36 350
50 % 22 46 276
40 % 22 46 294
30 % 40 87 199
Entity #2 | Chains: B,D,F,H
AGGLUTININ BETA-4 CHAIN protein, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 3 3344
95 % 2 3 4114
90 % 6 14 962
70 % 6 14 989
50 % 6 14 1030
40 % 6 14 1043
30 % 6 14 1020

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.