Sequence Similarity Clusters for the Entities in PDB 4AK4

Entity #1 | Chains: A,C,E,G,I,K,M,O
AGGLUTININ ALPHA CHAIN protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 9195
95 % 3 31 394 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.3
PDBFlex
90 % 4 32 386
70 % 4 36 390
50 % 7 49 285
40 % 7 49 317
30 % 18 93 214
Entity #2 | Chains: B,D,F,H,J,L,N,P
AGGLUTININ BETA-4 CHAIN protein, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 3813
95 % 1 3 4176
90 % 1 14 1031
70 % 1 14 1076
50 % 1 14 1129
40 % 1 14 1138
30 % 1 14 1130

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures