Sequence Similarity Clusters for the Entities in PDB 4AK4

Entity #1 | Chains: A,C,E,G,I,K,M,O
AGGLUTININ ALPHA CHAIN protein, length: 133 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 9721
95 % 3 31 368 Flexibility: No
Max RMSD: 0.8, Avg RMSD: 0.3
PDBFlex
90 % 4 32 368
70 % 4 36 379
50 % 7 49 269
40 % 7 49 284
30 % 18 93 195
Entity #2 | Chains: B,D,F,H,J,L,N,P
AGGLUTININ BETA-4 CHAIN protein, length: 21 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 3562
95 % 1 3 4343
90 % 1 14 1010
70 % 1 14 1044
50 % 1 14 1086
40 % 1 14 1096
30 % 1 14 1075

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures