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von Hippel-Lindau protein-ElonginB-ElonginC complex, bound to Hif1- alpha peptide
Sequence Clustering and Redundancy Reduction Results
4AJY
Sequence Clusters for the Sequence Entities in PDB 4AJY
Entity #1: Chains: B - TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 2 protein, length: 118 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 18 701
95% 1 20 918
90% 1 20 944
70% 1 20 979
50% 1 20 1020
40% 1 20 1042
30% 1 20 1022
Entity #2: Chains: C - TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 1 protein, length: 97 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 35 196
95% 1 36 276
90% 1 36 288
70% 1 36 308
50% 1 36 336
40% 1 36 362
30% 1 37 362
Entity #3: Chains: H - HYPOXIA-INDUCIBLE FACTOR 1-ALPHA protein, length: 19 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: V - VON HIPPEL-LINDAU DISEASE TUMOR SUPPRESSOR protein, length: 163 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 24 242
95% 1 24 340
90% 1 24 361
70% 1 24 387
50% 1 24 426
40% 1 24 455
30% 1 24 465
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.