Sequence Similarity Clusters for the Entities in PDB 4AJY

Entity #1 | Chains: B
TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 2 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 18 857
95 % 1 20 1105
90 % 1 20 1130
70 % 1 20 1172
50 % 1 20 1221
40 % 1 20 1236
30 % 1 20 1210
Entity #2 | Chains: C
TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 1 protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 37 212
95 % 1 38 298
90 % 1 38 312
70 % 1 38 350
50 % 1 38 407
40 % 1 38 443
30 % 1 39 436
Entity #3 | Chains: H
HYPOXIA-INDUCIBLE FACTOR 1-ALPHA protein, length: 19 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #4 | Chains: V
VON HIPPEL-LINDAU DISEASE TUMOR SUPPRESSOR protein, length: 163 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 25 261
95 % 1 25 381
90 % 1 25 410
70 % 1 25 454
50 % 1 25 528
40 % 1 25 568
30 % 1 25 564

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.