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von Hippel-Lindau protein-ElonginB-ElonginC complex, bound to Hif1- alpha peptide
Sequence Clustering and Redundancy Reduction Results
4AJY
Sequence Clusters for the Sequence Entities in PDB 4AJY
Entity #1: Chains: B - TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 2 protein, length: 118 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 18 729
95% 1 20 949
90% 1 20 976
70% 1 20 1015
50% 1 20 1062
40% 1 20 1082
30% 1 20 1055
Entity #2: Chains: C - TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 1 protein, length: 97 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 36 191
95% 1 37 264
90% 1 37 276
70% 1 37 299
50% 1 37 324
40% 1 37 355
30% 1 38 359
Entity #3: Chains: H - HYPOXIA-INDUCIBLE FACTOR 1-ALPHA protein, length: 19 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #4: Chains: V - VON HIPPEL-LINDAU DISEASE TUMOR SUPPRESSOR protein, length: 163 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 1 24 251
95% 1 24 352
90% 1 24 376
70% 1 24 399
50% 1 24 441
40% 1 24 474
30% 1 24 484
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.