Sequence Similarity Clusters for the Entities in PDB 4A93

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1732 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 113 205
95 % 14 113 287
90 % 14 113 301
70 % 14 113 324
50 % 14 123 322
40 % 14 123 349
30 % 14 123 358
Entity #10 | Chains: J
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 123 174
95 % 16 123 244
90 % 16 123 254
70 % 16 133 242
50 % 16 141 247
40 % 16 141 271
30 % 16 141 286
Entity #11 | Chains: K
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 115 201
95 % 14 115 284
90 % 14 115 297
70 % 14 115 322
50 % 14 115 348
40 % 14 116 367
30 % 14 116 377
Entity #12 | Chains: L
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 119 184
95 % 15 119 251
90 % 15 119 260
70 % 15 119 296
50 % 15 119 321
40 % 15 119 348
30 % 15 119 357
Entity #13 | Chains: N
5'-D(*TP*AP*AP*GP*TP*AP*CP*TP*TP*GP*AP*GP*CP*TP)-3' dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #14 | Chains: P
5'-R(*UP*UP*CP*GP*AP*CP*CP*AP*GP*GP*AP*AP)-3' rna, length: 12 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #15 | Chains: T
5'-D(*AP*GP*CP*TP*CP*AP*AP*GP*TP*AP*CP*T*TTP*TP*TP*CP*C BRUP*GP*GP*TP*CP*AP*TP*T)-3' dna, length: 25 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 114 202
95 % 14 115 280
90 % 14 115 293
70 % 14 115 318
50 % 14 125 315
40 % 14 133 298
30 % 14 136 304
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 110 209
95 % 13 110 295
90 % 13 110 310
70 % 13 110 331
50 % 13 111 354
40 % 13 111 385
30 % 13 111 391
Entity #4 | Chains: D
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 59 436
95 % 7 59 644
90 % 7 59 688
70 % 7 60 700
50 % 7 62 753
40 % 7 62 784
30 % 7 62 792
Entity #5 | Chains: E
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 124 168
95 % 17 124 235
90 % 17 124 246
70 % 17 124 276
50 % 17 125 303
40 % 17 134 296
30 % 17 134 317
Entity #6 | Chains: F
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 118 187
95 % 15 118 256
90 % 15 118 266
70 % 15 118 300
50 % 15 129 290
40 % 15 129 314
30 % 15 129 331
Entity #7 | Chains: G
RPB7, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 62 392
95 % 8 62 577
90 % 8 62 607
70 % 8 62 654
50 % 9 73 573
40 % 9 73 605
30 % 9 73 615
Entity #8 | Chains: H
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 123 172
95 % 16 124 239
90 % 16 124 249
70 % 16 124 280
50 % 16 124 313
40 % 16 124 333
30 % 16 135 310
Entity #9 | Chains: I
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 114 204
95 % 14 114 286
90 % 14 114 300
70 % 14 114 323
50 % 14 115 342
40 % 14 115 371
30 % 14 118 374

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.