Sequence Similarity Clusters for the Entities in PDB 4A8B

Entity #1 | Chains: A,B,C,D,E,F,G,H,I,J,K,L
PERIPLASMIC PH-DEPENDENT SERINE ENDOPROTEASE DEGQ protein, length: 436 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 601
95 % 3 4 812
90 % 3 4 843
70 % 3 4 878
50 % 11 14 504
40 % 15 18 456
30 % 15 18 456
Entity #2 | Chains: M,N,O,P,Q,R
LYSOZYME C protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 617 646 3
95 % 669 699 4
90 % 684 716 5
70 % 896 933 7
50 % 903 941 7
40 % 937 975 11
30 % 937 975 19

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.