POP-OUT | CLOSE

An Information Portal to 110071 Biological Macromolecular Structures

Symmetrized cryo-EM reconstruction of E. coli DegQ 12-mer in complex with lysozymes
Sequence Clustering and Redundancy Reduction Results
4A8B
Sequence Clusters for the Sequence Entities in PDB 4A8B
Entity #1: Chains: A,B,C,D,E,F,G,H,I,J,K,L - PERIPLASMIC PH-DEPENDENT SERINE ENDOPROTEASE DEGQ protein, length: 436 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 4 385
95% 3 4 566
90% 3 4 596
70% 3 4 652
50% 11 14 372
40% 15 18 329
30% 15 18 337
Entity #2: Chains: M,N,O,P,Q,R - LYSOZYME C protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 505 534 3
95% 557 587 4
90% 572 604 5
70% 782 819 6
50% 790 828 6
40% 824 862 10
30% 824 862 16
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.