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An Information Portal to 107049 Biological Macromolecular Structures

Symmetrized cryo-EM reconstruction of E. coli DegQ 12-mer in complex with lysozymes
Sequence Clustering and Redundancy Reduction Results
4A8B
Sequence Clusters for the Sequence Entities in PDB 4A8B
Entity #1: Chains: A,B,C,D,E,F,G,H,I,J,K,L - PERIPLASMIC PH-DEPENDENT SERINE ENDOPROTEASE DEGQ protein, length: 436 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 4 372
95% 3 4 540
90% 3 4 571
70% 3 4 627
50% 11 14 364
40% 14 17 331
30% 14 17 345
Entity #2: Chains: M,N,O,P,Q,R - LYSOZYME C protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 478 507 3
95% 526 556 4
90% 541 573 4
70% 751 788 6
50% 759 797 6
40% 793 831 10
30% 793 831 16
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.