Sequence Similarity Clusters for the Entities in PDB 4A8B

Entity #1 | Chains: A,B,C,D,E,F,G,H,I,J,K,L
PERIPLASMIC PH-DEPENDENT SERINE ENDOPROTEASE DEGQ protein, length: 436 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 600
95 % 3 4 811
90 % 3 4 842
70 % 3 4 877
50 % 11 14 504
40 % 15 18 455
30 % 15 18 456
Entity #2 | Chains: M,N,O,P,Q,R
LYSOZYME C protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 619 648 3
95 % 671 701 4
90 % 686 718 5
70 % 898 935 7
50 % 905 943 7
40 % 939 977 11
30 % 939 977 19

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.