Sequence Similarity Clusters for the Entities in PDB 4A8B

Entity #1 | Chains: A,B,C,D,E,F,G,H,I,J,K,L
PERIPLASMIC PH-DEPENDENT SERINE ENDOPROTEASE DEGQ protein, length: 436 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 714
95 % 3 4 970
90 % 3 4 990
70 % 3 4 1046
50 % 11 14 583
40 % 15 18 516
30 % 15 18 535
Entity #2 | Chains: M,N,O,P,Q,R
LYSOZYME C protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 699 728 3
95 % 751 781 5
90 % 766 798 6
70 % 773 805 10
50 % 993 1031 9
40 % 999 1037 9
30 % 1028 1066 13

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures