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Symmetrized cryo-EM reconstruction of E. coli DegQ 12-mer in complex with lysozymes
Sequence Clustering and Redundancy Reduction Results
4A8B
Sequence Clusters for the Sequence Entities in PDB 4A8B
Entity #1: Chains: A,B,C,D,E,F,G,H,I,J,K,L - PERIPLASMIC PH-DEPENDENT SERINE ENDOPROTEASE DEGQ protein, length: 436 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 3 4 371
95% 3 4 539
90% 3 4 570
70% 3 4 626
50% 11 14 363
40% 14 17 331
30% 14 17 345
Entity #2: Chains: M,N,O,P,Q,R - LYSOZYME C protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 475 504 3
95% 523 553 4
90% 538 570 4
70% 748 785 6
50% 756 794 6
40% 790 828 10
30% 790 828 16
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.