Sequence Similarity Clusters for the Entities in PDB 4A8B

Entity #1 | Chains: A,B,C,D,E,F,G,H,I,J,K,L
PERIPLASMIC PH-DEPENDENT SERINE ENDOPROTEASE DEGQ protein, length: 436 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 617
95 % 3 4 833
90 % 3 4 864
70 % 3 4 897
50 % 11 14 515
40 % 15 18 472
30 % 15 18 468
Entity #2 | Chains: M,N,O,P,Q,R
LYSOZYME C protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 634 663 3
95 % 686 716 4
90 % 701 733 5
70 % 916 953 7
50 % 923 961 8
40 % 957 995 11
30 % 957 995 20

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures