Sequence Similarity Clusters for the Entities in PDB 4A8B

Entity #1 | Chains: A,B,C,D,E,F,G,H,I,J,K,L
PERIPLASMIC PH-DEPENDENT SERINE ENDOPROTEASE DEGQ protein, length: 436 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 4 416
95 % 3 4 609
90 % 3 4 647
70 % 3 4 693
50 % 11 14 393
40 % 15 18 353
30 % 15 18 362
Entity #2 | Chains: M,N,O,P,Q,R
LYSOZYME C protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 542 571 3
95 % 594 624 4
90 % 609 641 5
70 % 819 856 6
50 % 827 865 6
40 % 861 899 10
30 % 861 899 17

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.