Sequence Similarity Clusters for the Entities in PDB 4A8A

Entity #1 | Chains: A,B,C,D,E,F,G,H,I,J,K,L
PERIPLASMIC PH-DEPENDENT SERINE ENDOPROTEASE DEGQ protein, length: 436 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 632
95 % 2 4 860
90 % 2 4 894
70 % 2 4 923
50 % 10 14 533
40 % 14 18 488
30 % 14 18 479
Entity #2 | Chains: M
LYSOZYME C protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 638 668 3
95 % 690 721 4
90 % 705 738 5
70 % 923 961 7
50 % 930 969 8
40 % 964 1003 11
30 % 964 1003 20

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures