Sequence Similarity Clusters for the Entities in PDB 4A8A

Entity #1 | Chains: A,B,C,D,E,F,G,H,I,J,K,L
PERIPLASMIC PH-DEPENDENT SERINE ENDOPROTEASE DEGQ protein, length: 436 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 733
95 % 2 4 897
90 % 2 4 930
70 % 2 4 958
50 % 10 14 547
40 % 14 18 503
30 % 14 18 502
Entity #2 | Chains: M
LYSOZYME C protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 686 717 3
95 % 703 734 3
90 % 718 751 5
70 % 936 974 7
50 % 943 982 8
40 % 978 1017 10
30 % 978 1017 20

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures