Sequence Similarity Clusters for the Entities in PDB 4A8A

Entity #1 | Chains: A,B,C,D,E,F,G,H,I,J,K,L
PERIPLASMIC PH-DEPENDENT SERINE ENDOPROTEASE DEGQ protein, length: 436 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 742
95 % 2 4 911
90 % 2 4 946
70 % 2 4 972
50 % 10 14 551
40 % 14 18 510
30 % 14 18 509
Entity #2 | Chains: M
LYSOZYME C protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 697 728 3
95 % 714 745 3
90 % 729 762 5
70 % 947 985 7
50 % 955 994 8
40 % 990 1029 10
30 % 990 1029 19

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures