Sequence Similarity Clusters for the Entities in PDB 4A8A

Entity #1 | Chains: A,B,C,D,E,F,G,H,I,J,K,L
PERIPLASMIC PH-DEPENDENT SERINE ENDOPROTEASE DEGQ protein, length: 436 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 4 764
95 % 2 4 933
90 % 2 4 965
70 % 2 4 990
50 % 10 14 563
40 % 14 18 518
30 % 15 19 514
Entity #2 | Chains: M
LYSOZYME C protein, length: 129 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 717 748 3
95 % 734 765 3
90 % 749 782 5
70 % 968 1006 7
50 % 976 1015 8
40 % 1011 1050 10
30 % 1011 1050 20

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures