Sequence Similarity Clusters for the Entities in PDB 4A3L

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1732 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 114 213
95 % 22 114 302
90 % 22 114 317
70 % 22 114 356
50 % 22 124 368
40 % 22 124 398
30 % 22 124 399
Entity #10 | Chains: J
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 131 174
95 % 24 131 238
90 % 24 131 248
70 % 24 141 264
50 % 24 149 259
40 % 24 149 282
30 % 24 149 290
Entity #11 | Chains: K
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 116 209
95 % 22 116 297
90 % 22 116 311
70 % 22 116 349
50 % 22 116 406
40 % 22 117 429
30 % 22 117 430
Entity #12 | Chains: L
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 127 180
95 % 23 127 248
90 % 23 127 256
70 % 23 127 291
50 % 23 127 326
40 % 23 127 357
30 % 23 127 361
Entity #13 | Chains: N
5'-D(*AP*AP*GP*TP*AP*CP*TP)-3' dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #14 | Chains: P
5'-R(*AP*CP*CP*AP*GP*GP*AP)-3' rna, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #15 | Chains: T
5'-D(*AP*GP*CP*TP*CP*AP*AP*GP*TP*AP*CP*TP*TP*TP *TP*TP*CP*CP*BRU*GP*GP*TP*CP*AP*TP*T)-3' dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 115 210
95 % 22 116 291
90 % 22 116 304
70 % 22 116 344
50 % 22 126 358
40 % 22 134 326
30 % 22 137 329
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 111 215
95 % 21 111 309
90 % 21 111 325
70 % 21 111 365
50 % 21 112 418
40 % 21 112 457
30 % 21 112 449
Entity #4 | Chains: D
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 60 515
95 % 11 60 726
90 % 11 60 755
70 % 11 61 788
50 % 11 63 802
40 % 11 63 826
30 % 11 63 824
Entity #5 | Chains: E
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 132 171
95 % 25 132 233
90 % 25 132 244
70 % 25 132 280
50 % 25 133 305
40 % 25 142 305
30 % 25 142 317
Entity #6 | Chains: F
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 126 181
95 % 23 126 251
90 % 23 126 259
70 % 23 126 294
50 % 23 137 300
40 % 23 137 319
30 % 23 137 333
Entity #7 | Chains: G
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 63 473
95 % 12 63 662
90 % 12 63 692
70 % 12 63 738
50 % 13 74 603
40 % 13 74 635
30 % 13 74 639
Entity #8 | Chains: H
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 131 173
95 % 24 132 236
90 % 24 132 247
70 % 24 132 281
50 % 24 132 314
40 % 24 132 335
30 % 24 143 315
Entity #9 | Chains: I
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 115 211
95 % 22 115 301
90 % 22 115 315
70 % 22 115 354
50 % 22 116 403
40 % 22 116 438
30 % 22 119 426

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.