Sequence Similarity Clusters for the Entities in PDB 4A3L

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1732 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 115 222
95 % 22 115 310
90 % 22 115 326
70 % 22 118 342
50 % 22 129 341
40 % 22 129 368
30 % 22 129 376
Entity #10 | Chains: J
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 137 178
95 % 24 137 234
90 % 24 137 247
70 % 24 151 254
50 % 24 159 243
40 % 24 159 267
30 % 24 159 274
Entity #11 | Chains: K
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 117 217
95 % 22 117 304
90 % 22 117 320
70 % 22 117 357
50 % 22 120 398
40 % 22 122 411
30 % 22 122 417
Entity #12 | Chains: L
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 133 180
95 % 23 133 243
90 % 23 133 255
70 % 23 133 287
50 % 23 136 313
40 % 23 136 328
30 % 23 136 339
Entity #13 | Chains: N
5'-D(*AP*AP*GP*TP*AP*CP*TP)-3' dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #14 | Chains: P
5'-R(*AP*CP*CP*AP*GP*GP*AP)-3' rna, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #15 | Chains: T
5'-D(*AP*GP*CP*TP*CP*AP*AP*GP*TP*AP*CP*TP*TP*TP *TP*TP*CP*CP*BRU*GP*GP*TP*CP*AP*TP*T)-3' dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 116 220
95 % 22 117 300
90 % 22 117 315
70 % 22 122 323
50 % 22 131 336
40 % 22 139 317
30 % 22 142 326
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 112 226
95 % 21 112 314
90 % 21 112 333
70 % 21 112 369
50 % 21 114 419
40 % 21 114 455
30 % 21 114 451
Entity #4 | Chains: D
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 61 547
95 % 11 61 758
90 % 11 61 787
70 % 11 62 815
50 % 11 67 740
40 % 11 67 776
30 % 11 67 766
Entity #5 | Chains: E
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 138 174
95 % 25 138 231
90 % 25 138 243
70 % 25 141 274
50 % 25 143 294
40 % 25 152 295
30 % 25 152 306
Entity #6 | Chains: F
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 132 182
95 % 23 132 247
90 % 23 132 258
70 % 23 132 289
50 % 23 147 285
40 % 23 147 303
30 % 23 147 315
Entity #7 | Chains: G
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 64 487
95 % 12 64 683
90 % 12 64 711
70 % 12 64 762
50 % 13 79 562
40 % 13 79 606
30 % 13 79 604
Entity #8 | Chains: H
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 137 177
95 % 24 138 232
90 % 24 138 244
70 % 24 138 279
50 % 24 141 301
40 % 24 141 315
30 % 24 153 303
Entity #9 | Chains: I
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 116 221
95 % 22 116 309
90 % 22 116 325
70 % 22 119 339
50 % 22 121 389
40 % 22 121 416
30 % 22 124 409

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.