Sequence Similarity Clusters for the Entities in PDB 4A3L

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1732 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 113 205
95 % 22 113 287
90 % 22 113 301
70 % 22 113 324
50 % 22 123 322
40 % 22 123 349
30 % 22 123 358
Entity #10 | Chains: J
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC5 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 24 123 174
95 % 24 123 244
90 % 24 123 254
70 % 24 133 242
50 % 24 141 247
40 % 24 141 271
30 % 24 141 286
Entity #11 | Chains: K
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 115 201
95 % 22 115 284
90 % 22 115 297
70 % 22 115 322
50 % 22 115 348
40 % 22 116 367
30 % 22 116 377
Entity #12 | Chains: L
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC4 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 119 184
95 % 23 119 251
90 % 23 119 260
70 % 23 119 296
50 % 23 119 321
40 % 23 119 348
30 % 23 119 357
Entity #13 | Chains: N
5'-D(*AP*AP*GP*TP*AP*CP*TP)-3' dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #14 | Chains: P
5'-R(*AP*CP*CP*AP*GP*GP*AP)-3' rna, length: 7 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #15 | Chains: T
5'-D(*AP*GP*CP*TP*CP*AP*AP*GP*TP*AP*CP*TP*TP*TP *TP*TP*CP*CP*BRU*GP*GP*TP*CP*AP*TP*T)-3' dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 114 202
95 % 22 115 280
90 % 22 115 293
70 % 22 115 318
50 % 22 125 315
40 % 22 133 298
30 % 22 136 304
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 21 110 209
95 % 21 110 295
90 % 21 110 310
70 % 21 110 331
50 % 21 111 354
40 % 21 111 385
30 % 21 111 391
Entity #4 | Chains: D
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 11 59 436
95 % 11 59 644
90 % 11 59 688
70 % 11 60 700
50 % 11 62 753
40 % 11 62 784
30 % 11 62 792
Entity #5 | Chains: E
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 25 124 168
95 % 25 124 235
90 % 25 124 246
70 % 25 124 276
50 % 25 125 303
40 % 25 134 296
30 % 25 134 317
Entity #6 | Chains: F
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 118 187
95 % 23 118 256
90 % 23 118 266
70 % 23 118 300
50 % 23 129 290
40 % 23 129 314
30 % 23 129 331
Entity #7 | Chains: G
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 62 392
95 % 12 62 577
90 % 12 62 607
70 % 12 62 654
50 % 13 73 573
40 % 13 73 605
30 % 13 73 615
Entity #8 | Chains: H
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 23 123 172
95 % 24 124 239
90 % 24 124 249
70 % 24 124 280
50 % 24 124 313
40 % 24 124 333
30 % 24 135 310
Entity #9 | Chains: I
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 22 114 204
95 % 22 114 286
90 % 22 114 300
70 % 22 114 323
50 % 22 115 342
40 % 22 115 371
30 % 22 118 374

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.