Sequence Similarity Clusters for the Entities in PDB 4A3J

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1732 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 109 206
95 % 31 109 294
90 % 31 109 306
70 % 31 109 328
50 % 31 111 338
40 % 31 111 373
30 % 31 111 377
Entity #10 | Chains: J
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 119 162
95 % 33 119 230
90 % 33 119 240
70 % 33 121 266
50 % 33 129 265
40 % 33 129 288
30 % 33 129 305
Entity #11 | Chains: K
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 111 201
95 % 31 111 290
90 % 31 111 302
70 % 31 111 323
50 % 31 111 348
40 % 31 112 372
30 % 31 112 375
Entity #12 | Chains: L
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 117 172
95 % 33 117 245
90 % 33 117 254
70 % 33 117 287
50 % 33 117 318
40 % 33 117 344
30 % 33 117 352
Entity #13 | Chains: N
5'-D(*GP*TP*AP*GP*AP*AP*AP*GP*CP*TP*AP*GP*CP*TP)-3' dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #14 | Chains: P
5'-R(*CP*AP)-3' rna, length: 2 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #15 | Chains: T
5'-D(*AP*GP*CP*TP*AP*GP*CP*TP*TP*TP*CP*BRUP*AP*CP*CP *TP*GP*AP*AP*CP*AP*AP*CP*TP*AP*AP*CP)-3' dna, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 110 203
95 % 31 111 287
90 % 31 111 300
70 % 31 111 321
50 % 31 113 335
40 % 31 121 321
30 % 31 124 328
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 108 208
95 % 31 108 296
90 % 31 108 310
70 % 31 108 331
50 % 31 109 350
40 % 31 109 381
30 % 31 109 383
Entity #4 | Chains: D
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 55 464
95 % 15 55 664
90 % 15 55 697
70 % 15 56 735
50 % 15 58 793
40 % 15 58 821
30 % 15 58 814
Entity #5 | Chains: E
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 120 159
95 % 34 120 224
90 % 34 120 235
70 % 34 120 271
50 % 34 121 302
40 % 34 122 320
30 % 34 122 335
Entity #6 | Chains: F
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 116 176
95 % 33 116 248
90 % 33 116 257
70 % 33 116 291
50 % 33 119 306
40 % 33 119 332
30 % 33 119 342
Entity #7 | Chains: G
RPB7, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 58 406
95 % 16 58 603
90 % 16 58 639
70 % 16 58 683
50 % 17 61 691
40 % 17 61 724
30 % 17 61 728
Entity #8 | Chains: H
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 119 161
95 % 33 120 226
90 % 33 120 237
70 % 33 120 273
50 % 33 120 307
40 % 33 120 333
30 % 33 123 332
Entity #9 | Chains: I
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 110 205
95 % 31 110 293
90 % 31 110 305
70 % 31 110 327
50 % 31 111 341
40 % 31 111 376
30 % 31 114 370

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.