Sequence Similarity Clusters for the Entities in PDB 4A3J

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1732 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 114 209
95 % 32 114 296
90 % 32 114 308
70 % 32 114 336
50 % 32 124 332
40 % 32 124 359
30 % 32 124 366
Entity #10 | Chains: J
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 128 174
95 % 34 128 239
90 % 34 128 249
70 % 34 138 263
50 % 34 146 259
40 % 34 146 279
30 % 34 146 289
Entity #11 | Chains: K
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 116 204
95 % 32 116 291
90 % 32 116 303
70 % 32 116 330
50 % 32 116 369
40 % 32 117 393
30 % 32 117 393
Entity #12 | Chains: L
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 124 180
95 % 33 124 249
90 % 33 124 256
70 % 33 124 292
50 % 33 124 323
40 % 33 124 345
30 % 33 124 352
Entity #13 | Chains: N
5'-D(*GP*TP*AP*GP*AP*AP*AP*GP*CP*TP*AP*GP*CP*TP)-3' dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #14 | Chains: P
5'-R(*CP*AP)-3' rna, length: 2 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #15 | Chains: T
5'-D(*AP*GP*CP*TP*AP*GP*CP*TP*TP*TP*CP*BRUP*AP*CP*CP *TP*GP*AP*AP*CP*AP*AP*CP*TP*AP*AP*CP)-3' dna, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 115 205
95 % 32 116 286
90 % 32 116 297
70 % 32 116 326
50 % 32 126 328
40 % 32 134 317
30 % 32 137 321
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 111 211
95 % 31 111 305
90 % 31 111 318
70 % 31 111 344
50 % 31 112 388
40 % 31 112 427
30 % 31 112 419
Entity #4 | Chains: D
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 60 493
95 % 16 60 697
90 % 16 60 728
70 % 16 61 753
50 % 16 63 771
40 % 16 63 801
30 % 16 63 802
Entity #5 | Chains: E
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 129 170
95 % 35 129 233
90 % 35 129 242
70 % 35 129 275
50 % 35 130 304
40 % 35 139 306
30 % 35 139 315
Entity #6 | Chains: F
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 123 182
95 % 33 123 254
90 % 33 123 262
70 % 33 123 297
50 % 33 134 297
40 % 33 134 320
30 % 33 134 332
Entity #7 | Chains: G
RPB7, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 63 445
95 % 17 63 635
90 % 17 63 671
70 % 17 63 711
50 % 18 74 584
40 % 18 74 621
30 % 18 74 630
Entity #8 | Chains: H
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 128 173
95 % 34 129 236
90 % 34 129 245
70 % 34 129 277
50 % 34 129 312
40 % 34 129 333
30 % 34 140 311
Entity #9 | Chains: I
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 115 207
95 % 32 115 295
90 % 32 115 307
70 % 32 115 335
50 % 32 116 365
40 % 32 116 401
30 % 32 119 386

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.