Sequence Similarity Clusters for the Entities in PDB 4A3J

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1732 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 114 216
95 % 32 114 308
90 % 32 114 324
70 % 32 114 360
50 % 32 125 367
40 % 32 125 397
30 % 32 125 400
Entity #10 | Chains: J
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 132 177
95 % 34 132 242
90 % 34 132 253
70 % 34 143 266
50 % 34 151 259
40 % 34 151 281
30 % 34 151 289
Entity #11 | Chains: K
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 116 213
95 % 32 116 304
90 % 32 116 319
70 % 32 116 355
50 % 32 116 412
40 % 32 118 430
30 % 32 118 433
Entity #12 | Chains: L
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 128 182
95 % 33 128 251
90 % 33 128 261
70 % 33 128 293
50 % 33 128 331
40 % 33 128 355
30 % 33 128 365
Entity #13 | Chains: N
5'-D(*GP*TP*AP*GP*AP*AP*AP*GP*CP*TP*AP*GP*CP*TP)-3' dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #14 | Chains: P
5'-R(*CP*AP)-3' rna, length: 2 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #15 | Chains: T
5'-D(*AP*GP*CP*TP*AP*GP*CP*TP*TP*TP*CP*BRUP*AP*CP*CP *TP*GP*AP*AP*CP*AP*AP*CP*TP*AP*AP*CP)-3' dna, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 115 214
95 % 32 116 298
90 % 32 116 313
70 % 32 116 350
50 % 32 127 358
40 % 32 135 326
30 % 32 138 328
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 111 220
95 % 31 111 315
90 % 31 111 332
70 % 31 111 371
50 % 31 113 419
40 % 31 113 454
30 % 31 113 449
Entity #4 | Chains: D
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 60 546
95 % 16 60 762
90 % 16 60 789
70 % 16 61 816
50 % 16 63 822
40 % 16 63 848
30 % 16 63 839
Entity #5 | Chains: E
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 133 174
95 % 35 133 236
90 % 35 133 249
70 % 35 133 282
50 % 35 135 307
40 % 35 144 306
30 % 35 144 320
Entity #6 | Chains: F
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 127 183
95 % 33 127 253
90 % 33 127 262
70 % 33 127 295
50 % 33 139 300
40 % 33 139 319
30 % 33 139 327
Entity #7 | Chains: G
RPB7, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 63 489
95 % 17 63 682
90 % 17 63 712
70 % 17 63 760
50 % 18 75 603
40 % 18 75 634
30 % 18 75 638
Entity #8 | Chains: H
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 132 176
95 % 34 133 237
90 % 34 133 250
70 % 34 133 283
50 % 34 133 315
40 % 34 133 335
30 % 34 145 318
Entity #9 | Chains: I
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 115 215
95 % 32 115 307
90 % 32 115 322
70 % 32 115 358
50 % 32 117 404
40 % 32 117 435
30 % 32 120 427

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.