Sequence Similarity Clusters for the Entities in PDB 4A3J

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1732 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 113 206
95 % 32 113 288
90 % 32 113 302
70 % 32 113 326
50 % 32 123 327
40 % 32 123 353
30 % 32 123 362
Entity #10 | Chains: J
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 34 124 176
95 % 34 124 241
90 % 34 124 251
70 % 34 134 254
50 % 34 142 252
40 % 34 142 273
30 % 34 142 289
Entity #11 | Chains: K
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 115 203
95 % 32 115 285
90 % 32 115 299
70 % 32 115 323
50 % 32 115 354
40 % 32 116 376
30 % 32 116 382
Entity #12 | Chains: L
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 120 181
95 % 33 120 251
90 % 33 120 260
70 % 33 120 296
50 % 33 120 325
40 % 33 120 351
30 % 33 120 359
Entity #13 | Chains: N
5'-D(*GP*TP*AP*GP*AP*AP*AP*GP*CP*TP*AP*GP*CP*TP)-3' dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #14 | Chains: P
5'-R(*CP*AP)-3' rna, length: 2 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #15 | Chains: T
5'-D(*AP*GP*CP*TP*AP*GP*CP*TP*TP*TP*CP*BRUP*AP*CP*CP *TP*GP*AP*AP*CP*AP*AP*CP*TP*AP*AP*CP)-3' dna, length: 27 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 114 204
95 % 32 115 281
90 % 32 115 295
70 % 32 115 319
50 % 32 125 321
40 % 32 133 307
30 % 32 136 310
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 110 209
95 % 31 110 299
90 % 31 110 314
70 % 31 110 334
50 % 31 111 360
40 % 31 111 393
30 % 31 111 395
Entity #4 | Chains: D
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 59 445
95 % 16 59 652
90 % 16 59 696
70 % 16 60 709
50 % 16 62 755
40 % 16 62 789
30 % 16 62 793
Entity #5 | Chains: E
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 35 125 171
95 % 35 125 235
90 % 35 125 246
70 % 35 125 277
50 % 35 126 308
40 % 35 135 301
30 % 35 135 317
Entity #6 | Chains: F
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 119 186
95 % 33 119 252
90 % 33 119 261
70 % 33 119 298
50 % 33 130 294
40 % 33 130 318
30 % 33 130 332
Entity #7 | Chains: G
RPB7, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 17 62 396
95 % 17 62 579
90 % 17 62 609
70 % 17 62 657
50 % 18 73 575
40 % 18 73 608
30 % 18 73 619
Entity #8 | Chains: H
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 33 124 175
95 % 34 125 236
90 % 34 125 247
70 % 34 125 279
50 % 34 125 316
40 % 34 125 336
30 % 34 136 313
Entity #9 | Chains: I
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 32 114 205
95 % 32 114 287
90 % 32 114 301
70 % 32 114 325
50 % 32 115 347
40 % 32 115 380
30 % 32 118 378

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.