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RNA Polymerase II binary complex with DNA
Sequence Clustering and Redundancy Reduction Results
4A3I
Sequence Clusters for the Sequence Entities in PDB 4A3I
Entity #1: Chains: A - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1732 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 96 203
95% 34 96 288
90% 34 96 303
70% 34 96 321
50% 34 97 345
40% 34 97 366
30% 34 97 381
Entity #10: Chains: J - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 102 186
95% 36 102 265
90% 36 102 277
70% 36 103 286
50% 36 112 272
40% 36 112 301
30% 36 112 317
Entity #11: Chains: K - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 98 200
95% 34 98 284
90% 34 98 299
70% 34 98 315
50% 34 98 354
40% 34 99 362
30% 34 99 374
Entity #12: Chains: L - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 101 188
95% 36 101 270
90% 36 101 282
70% 36 101 300
50% 36 101 335
40% 36 101 357
30% 36 101 370
Entity #13: Chains: N - 5'-D(*GP*GP*CP*AP*CP*AP*AP*CP*TP*GP*CP*GP*GP*CP*T)-3' dna, length: 15 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #14: Chains: T - TEMPLATE DNA 27-MER dna, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: B - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 97 201
95% 34 98 281
90% 34 98 296
70% 34 98 313
50% 34 99 339
40% 34 108 308
30% 34 108 326
Entity #3: Chains: C - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 96 205
95% 34 96 289
90% 34 96 304
70% 34 96 322
50% 34 97 348
40% 34 97 368
30% 34 97 383
Entity #4: Chains: D - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 49 447
95% 16 49 646
90% 16 49 679
70% 16 50 712
50% 16 50 789
40% 16 50 807
30% 16 50 809
Entity #5: Chains: E - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 103 180
95% 37 103 254
90% 37 103 266
70% 37 103 291
50% 37 104 309
40% 37 104 336
30% 37 104 348
Entity #6: Chains: F - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 100 190
95% 36 100 274
90% 36 100 286
70% 36 100 306
50% 36 102 325
40% 36 102 347
30% 36 102 360
Entity #7: Chains: G - RPB7, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 51 417
95% 17 51 608
90% 17 51 639
70% 17 51 678
50% 18 53 648
40% 18 53 678
30% 18 53 679
Entity #8: Chains: H - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 102 185
95% 36 103 255
90% 36 103 268
70% 36 103 292
50% 36 103 326
40% 36 103 348
30% 36 105 344
Entity #9: Chains: I - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 97 202
95% 34 97 287
90% 34 97 302
70% 34 97 319
50% 34 98 343
40% 34 98 364
30% 34 98 378
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.