POP-OUT | CLOSE
 
RNA Polymerase II binary complex with DNA
Sequence Clustering and Redundancy Reduction Results
4A3I
Sequence Clusters for the Sequence Entities in PDB 4A3I
Entity #1: Chains: A - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1732 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 96 202
95% 34 96 286
90% 34 96 299
70% 34 96 315
50% 34 97 336
40% 34 97 359
30% 34 97 372
Entity #10: Chains: J - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 102 180
95% 36 102 258
90% 36 102 268
70% 36 103 278
50% 36 103 310
40% 36 111 294
30% 36 111 311
Entity #11: Chains: K - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 98 199
95% 34 98 281
90% 34 98 294
70% 34 98 310
50% 34 98 345
40% 34 99 353
30% 34 99 365
Entity #12: Chains: L - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 101 185
95% 36 101 266
90% 36 101 277
70% 36 101 294
50% 36 101 325
40% 36 101 348
30% 36 101 359
Entity #13: Chains: N - 5'-D(*GP*GP*CP*AP*CP*AP*AP*CP*TP*GP*CP*GP*GP*CP*T)-3' dna, length: 15 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #14: Chains: T - TEMPLATE DNA 27-MER dna, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: B - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 97 200
95% 34 98 278
90% 34 98 291
70% 34 98 308
50% 34 99 329
40% 34 107 301
30% 34 107 319
Entity #3: Chains: C - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 96 204
95% 34 96 287
90% 34 96 300
70% 34 96 317
50% 34 97 339
40% 34 97 361
30% 34 97 374
Entity #4: Chains: D - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 49 441
95% 16 49 639
90% 16 49 672
70% 16 50 695
50% 16 50 753
40% 16 50 765
30% 16 50 772
Entity #5: Chains: E - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 103 175
95% 37 103 248
90% 37 103 259
70% 37 103 285
50% 37 104 301
40% 37 104 327
30% 37 104 339
Entity #6: Chains: F - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 100 187
95% 36 100 270
90% 36 100 281
70% 36 100 300
50% 36 102 315
40% 36 102 337
30% 36 102 349
Entity #7: Chains: G - RPB7, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 51 410
95% 17 51 597
90% 17 51 631
70% 17 51 664
50% 18 53 633
40% 18 53 659
30% 18 53 659
Entity #8: Chains: H - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 102 178
95% 36 103 249
90% 36 103 261
70% 36 103 286
50% 36 103 316
40% 36 103 338
30% 36 105 336
Entity #9: Chains: I - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 97 201
95% 34 97 285
90% 34 97 298
70% 34 97 314
50% 34 98 333
40% 34 98 356
30% 34 98 369
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.