POP-OUT | CLOSE

An Information Portal to 111749 Biological Macromolecular Structures

RNA Polymerase II binary complex with DNA
Sequence Clustering and Redundancy Reduction Results
4A3I
Sequence Clusters for the Sequence Entities in PDB 4A3I
Entity #1: Chains: A - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1732 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 108 198
95% 34 108 274
90% 34 108 288
70% 34 108 310
50% 34 109 330
40% 34 109 360
30% 34 109 366
Entity #10: Chains: J - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 114 184
95% 36 114 252
90% 36 114 262
70% 36 115 273
50% 36 123 270
40% 36 123 296
30% 36 123 311
Entity #11: Chains: K - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 110 194
95% 34 110 271
90% 34 110 284
70% 34 110 305
50% 34 110 334
40% 34 111 354
30% 34 111 363
Entity #12: Chains: L - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 113 187
95% 36 113 254
90% 36 113 265
70% 36 113 291
50% 36 113 318
40% 36 113 350
30% 36 113 357
Entity #13: Chains: N - 5'-D(*GP*GP*CP*AP*CP*AP*AP*CP*TP*GP*CP*GP*GP*CP*T)-3' dna, length: 15 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #14: Chains: T - TEMPLATE DNA 27-MER dna, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: B - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 109 195
95% 34 110 267
90% 34 110 280
70% 34 110 302
50% 34 111 321
40% 34 119 308
30% 34 119 319
Entity #3: Chains: C - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 108 200
95% 34 108 277
90% 34 108 291
70% 34 108 311
50% 34 109 331
40% 34 109 364
30% 34 109 368
Entity #4: Chains: D - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 55 428
95% 16 55 617
90% 16 55 648
70% 16 56 689
50% 16 56 778
40% 16 56 805
30% 16 56 804
Entity #5: Chains: E - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 115 171
95% 37 115 240
90% 37 115 250
70% 37 115 279
50% 37 116 305
40% 37 116 335
30% 37 116 342
Entity #6: Chains: F - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 112 188
95% 36 112 256
90% 36 112 268
70% 36 112 294
50% 36 114 313
40% 36 114 341
30% 36 114 351
Entity #7: Chains: G - RPB7, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 57 400
95% 17 57 589
90% 17 57 617
70% 17 57 668
50% 18 59 672
40% 18 59 703
30% 18 59 704
Entity #8: Chains: H - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 114 180
95% 36 115 242
90% 36 115 252
70% 36 115 282
50% 36 115 314
40% 36 115 342
30% 36 117 336
Entity #9: Chains: I - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 109 196
95% 34 109 273
90% 34 109 287
70% 34 109 309
50% 34 110 329
40% 34 110 359
30% 34 110 365
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.