POP-OUT | CLOSE

An Information Portal to 108395 Biological Macromolecular Structures

RNA Polymerase II binary complex with DNA
Sequence Clustering and Redundancy Reduction Results
4A3I
Sequence Clusters for the Sequence Entities in PDB 4A3I
Entity #1: Chains: A - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1732 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 101 204
95% 34 101 289
90% 34 101 304
70% 34 101 321
50% 34 102 348
40% 34 102 374
30% 34 102 380
Entity #10: Chains: J - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 107 188
95% 36 107 263
90% 36 107 275
70% 36 108 287
50% 36 116 274
40% 36 116 304
30% 36 116 319
Entity #11: Chains: K - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 103 200
95% 34 103 283
90% 34 103 298
70% 34 103 317
50% 34 103 352
40% 34 104 368
30% 34 104 374
Entity #12: Chains: L - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 106 190
95% 36 106 265
90% 36 106 279
70% 36 106 298
50% 36 106 327
40% 36 106 355
30% 36 106 363
Entity #13: Chains: N - 5'-D(*GP*GP*CP*AP*CP*AP*AP*CP*TP*GP*CP*GP*GP*CP*T)-3' dna, length: 15 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #14: Chains: T - TEMPLATE DNA 27-MER dna, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: B - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 102 201
95% 34 103 280
90% 34 103 294
70% 34 103 314
50% 34 104 339
40% 34 112 317
30% 34 112 327
Entity #3: Chains: C - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 101 205
95% 34 101 291
90% 34 101 306
70% 34 101 323
50% 34 102 350
40% 34 102 377
30% 34 102 384
Entity #4: Chains: D - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 51 450
95% 16 51 652
90% 16 51 684
70% 16 52 726
50% 16 52 816
40% 16 52 835
30% 16 52 841
Entity #5: Chains: E - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 108 186
95% 37 108 257
90% 37 108 270
70% 37 108 289
50% 37 109 308
40% 37 109 335
30% 37 109 347
Entity #6: Chains: F - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 105 193
95% 36 105 274
90% 36 105 286
70% 36 105 305
50% 36 107 318
40% 36 107 349
30% 36 107 354
Entity #7: Chains: G - RPB7, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 53 426
95% 17 53 622
90% 17 53 652
70% 17 53 701
50% 18 55 692
40% 18 55 717
30% 18 55 719
Entity #8: Chains: H - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 107 187
95% 36 108 258
90% 36 108 271
70% 36 108 290
50% 36 108 319
40% 36 108 350
30% 36 110 345
Entity #9: Chains: I - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 102 203
95% 34 102 288
90% 34 102 303
70% 34 102 320
50% 34 103 346
40% 34 103 372
30% 34 103 378
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.