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RNA Polymerase II binary complex with DNA
Sequence Clustering and Redundancy Reduction Results
4A3I
Sequence Clusters for the Sequence Entities in PDB 4A3I
Entity #1: Chains: A - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1732 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 96 203
95% 34 96 287
90% 34 96 300
70% 34 96 316
50% 34 97 338
40% 34 97 361
30% 34 97 374
Entity #10: Chains: J - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 102 181
95% 36 102 259
90% 36 102 269
70% 36 103 279
50% 36 103 311
40% 36 111 294
30% 36 111 311
Entity #11: Chains: K - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 98 200
95% 34 98 282
90% 34 98 295
70% 34 98 311
50% 34 98 347
40% 34 99 356
30% 34 99 367
Entity #12: Chains: L - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 101 186
95% 36 101 267
90% 36 101 278
70% 36 101 295
50% 36 101 327
40% 36 101 351
30% 36 101 362
Entity #13: Chains: N - 5'-D(*GP*GP*CP*AP*CP*AP*AP*CP*TP*GP*CP*GP*GP*CP*T)-3' dna, length: 15 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #14: Chains: T - TEMPLATE DNA 27-MER dna, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: B - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 97 201
95% 34 98 279
90% 34 98 292
70% 34 98 309
50% 34 99 331
40% 34 107 301
30% 34 107 319
Entity #3: Chains: C - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 96 205
95% 34 96 288
90% 34 96 301
70% 34 96 318
50% 34 97 341
40% 34 97 363
30% 34 97 376
Entity #4: Chains: D - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 16 49 444
95% 16 49 642
90% 16 49 675
70% 16 50 698
50% 16 50 756
40% 16 50 768
30% 16 50 776
Entity #5: Chains: E - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 37 103 175
95% 37 103 249
90% 37 103 260
70% 37 103 286
50% 37 104 301
40% 37 104 328
30% 37 104 339
Entity #6: Chains: F - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 36 100 188
95% 36 100 271
90% 36 100 282
70% 36 100 301
50% 36 102 316
40% 36 102 339
30% 36 102 350
Entity #7: Chains: G - RPB7, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 17 51 413
95% 17 51 604
90% 17 51 635
70% 17 51 667
50% 18 53 636
40% 18 53 662
30% 18 53 663
Entity #8: Chains: H - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 35 102 179
95% 36 103 250
90% 36 103 262
70% 36 103 287
50% 36 103 317
40% 36 103 340
30% 36 105 336
Entity #9: Chains: I - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 34 97 202
95% 34 97 286
90% 34 97 299
70% 34 97 315
50% 34 98 335
40% 34 98 358
30% 34 98 371
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.