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RNA Polymerase II initial transcribing complex with a 2nt DNA-RNA hybrid
Sequence Clustering and Redundancy Reduction Results
4A3G
Sequence Clusters for the Sequence Entities in PDB 4A3G
Entity #1: Chains: A - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1732 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 101 204
95% 26 101 289
90% 26 101 303
70% 26 101 320
50% 26 102 349
40% 26 102 374
30% 26 102 381
Entity #10: Chains: J - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 107 187
95% 28 107 263
90% 28 107 275
70% 28 108 286
50% 28 116 274
40% 28 116 303
30% 28 116 320
Entity #11: Chains: K - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 103 200
95% 26 103 283
90% 26 103 297
70% 26 103 316
50% 26 103 353
40% 26 104 368
30% 26 104 375
Entity #12: Chains: L - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 106 189
95% 28 106 265
90% 28 106 279
70% 28 106 298
50% 28 106 328
40% 28 106 355
30% 28 106 364
Entity #13: Chains: N - NON TEMPLATE DNA 5'-D(*GP*GP*CP*AP*CP*AP*AP*CP*TP*GP*CP *GP*CP*TP)-3' dna, length: 14 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #14: Chains: P - TRANSCRIPT RNA 5'-R(*CP*AP)-3' rna, length: 2 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #15: Chains: T - TEMPLATE DNA 5'-D(*AP*GP*CP*GP*CP*AP*GP*TP*TP*GP*TP*GP *CP*TP*AP*TP*GP*AP*BRUP*AP*TP*TP*TP*TP*TP*AP*DT)-3' dna, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: B - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 102 201
95% 26 103 280
90% 26 103 293
70% 26 103 314
50% 26 104 340
40% 26 112 316
30% 26 112 327
Entity #3: Chains: C - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 101 205
95% 26 101 291
90% 26 101 305
70% 26 101 322
50% 26 102 351
40% 26 102 377
30% 26 102 385
Entity #4: Chains: D - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 12 51 447
95% 12 51 648
90% 12 51 681
70% 12 52 725
50% 12 52 815
40% 12 52 834
30% 12 52 841
Entity #5: Chains: E - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 29 108 184
95% 29 108 257
90% 29 108 270
70% 29 108 289
50% 29 109 307
40% 29 109 334
30% 29 109 347
Entity #6: Chains: F - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 28 105 193
95% 28 105 274
90% 28 105 286
70% 28 105 305
50% 28 107 319
40% 28 107 349
30% 28 107 355
Entity #7: Chains: G - RPB7, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 13 53 424
95% 13 53 617
90% 13 53 648
70% 13 53 699
50% 14 55 688
40% 14 55 713
30% 14 55 715
Entity #8: Chains: H - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 27 107 186
95% 28 108 258
90% 28 108 271
70% 28 108 290
50% 28 108 320
40% 28 108 350
30% 28 110 346
Entity #9: Chains: I - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 26 102 203
95% 26 102 288
90% 26 102 302
70% 26 102 319
50% 26 103 347
40% 26 103 372
30% 26 103 379
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.