Sequence Similarity Clusters for the Entities in PDB 4A3F

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1732 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 113 203
95 % 13 113 285
90 % 13 113 299
70 % 13 113 323
50 % 13 123 315
40 % 13 123 343
30 % 13 123 353
Entity #10 | Chains: J
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 123 159
95 % 15 123 224
90 % 15 123 235
70 % 15 133 214
50 % 15 141 242
40 % 15 141 268
30 % 15 141 283
Entity #11 | Chains: K
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 115 200
95 % 13 115 282
90 % 13 115 295
70 % 13 115 320
50 % 13 115 344
40 % 13 116 364
30 % 13 116 375
Entity #12 | Chains: L
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 119 165
95 % 14 119 235
90 % 14 119 245
70 % 14 119 280
50 % 14 119 314
40 % 14 119 342
30 % 14 119 352
Entity #13 | Chains: N
NON TEMPLATE DNA 5'-D(*TP*AP*AP*GP*TP*AP*CP*TP*TP*GP*AP *GP*CP*TP)-3' dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #14 | Chains: P
TRANSCRIPT RNA 5'-R(*CP*CP*AP*GP*GP*AP)-3' rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #15 | Chains: T
5'-D(*AP*GP*CP*TP*CP*AP*AP*GP*TP*AP*CP*TP*TP*DTP *TP*TP*CP*C BRU*GP*GP*TP*CP*AP*TP*T)-3' dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 114 201
95 % 13 115 278
90 % 13 115 291
70 % 13 115 317
50 % 13 125 308
40 % 13 133 294
30 % 13 136 302
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 110 207
95 % 12 110 294
90 % 12 110 308
70 % 12 110 330
50 % 12 111 349
40 % 12 111 381
30 % 12 111 387
Entity #4 | Chains: D
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 6 59 433
95 % 6 59 638
90 % 6 59 684
70 % 6 60 698
50 % 6 62 749
40 % 6 62 779
30 % 6 62 786
Entity #5 | Chains: E
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 16 124 152
95 % 16 124 214
90 % 16 124 225
70 % 16 124 258
50 % 16 125 294
40 % 16 134 293
30 % 16 134 313
Entity #6 | Chains: F
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 118 168
95 % 14 118 240
90 % 14 118 251
70 % 14 118 284
50 % 14 129 280
40 % 14 129 307
30 % 14 129 328
Entity #7 | Chains: G
RPB7, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 7 62 387
95 % 7 62 571
90 % 7 62 603
70 % 7 62 652
50 % 8 73 561
40 % 8 73 596
30 % 8 73 603
Entity #8 | Chains: H
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 123 158
95 % 15 124 218
90 % 15 124 228
70 % 15 124 262
50 % 15 124 305
40 % 15 124 327
30 % 15 135 308
Entity #9 | Chains: I
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 114 202
95 % 13 114 284
90 % 13 114 298
70 % 13 114 322
50 % 13 115 340
40 % 13 115 369
30 % 13 118 371

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.