Sequence Similarity Clusters for the Entities in PDB 4A3E

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1732 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 115 222
95 % 8 115 310
90 % 8 115 326
70 % 8 118 342
50 % 8 129 341
40 % 8 129 368
30 % 8 129 376
Entity #10 | Chains: J
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 137 178
95 % 9 137 234
90 % 9 137 247
70 % 9 151 254
50 % 9 159 243
40 % 9 159 267
30 % 9 159 274
Entity #11 | Chains: K
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 117 217
95 % 8 117 304
90 % 8 117 320
70 % 8 117 357
50 % 8 120 398
40 % 8 122 411
30 % 8 122 417
Entity #12 | Chains: L
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 133 180
95 % 9 133 243
90 % 9 133 255
70 % 9 133 287
50 % 9 136 313
40 % 9 136 328
30 % 9 136 339
Entity #13 | Chains: N
NON TEMPLATE DNA 5'-D(*TP*AP*AP*GP*TP*AP*CP*TP*TP*GP*AP *GP*CP*TP)-3' dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #14 | Chains: P
TRANSCRIPT RNA 5'-R(*CP*AP*GP*GP*AP)-3' rna, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #15 | Chains: T
TEMPLATE DNA 5'-D(*AP*GP*CP*TP*CP*AP*AP*GP*TP*AP*CP*TP*TP *TP*TP*TP*CP*CP*BRU*GP*GP*TP*CP*AP*TP*TP)-3' dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 116 220
95 % 8 117 300
90 % 8 117 315
70 % 8 122 323
50 % 8 131 336
40 % 8 139 317
30 % 8 142 326
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 112 226
95 % 8 112 314
90 % 8 112 333
70 % 8 112 369
50 % 8 114 419
40 % 8 114 455
30 % 8 114 451
Entity #4 | Chains: D
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 61 547
95 % 3 61 758
90 % 3 61 787
70 % 3 62 815
50 % 3 67 740
40 % 3 67 776
30 % 3 67 766
Entity #5 | Chains: E
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 138 174
95 % 10 138 231
90 % 10 138 243
70 % 10 141 274
50 % 10 143 294
40 % 10 152 295
30 % 10 152 306
Entity #6 | Chains: F
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 132 182
95 % 9 132 247
90 % 9 132 258
70 % 9 132 289
50 % 9 147 285
40 % 9 147 303
30 % 9 147 315
Entity #7 | Chains: G
RPB7, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 64 487
95 % 4 64 683
90 % 4 64 711
70 % 4 64 762
50 % 5 79 562
40 % 5 79 606
30 % 5 79 604
Entity #8 | Chains: H
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 137 177
95 % 9 138 232
90 % 9 138 244
70 % 9 138 279
50 % 9 141 301
40 % 9 141 315
30 % 9 153 303
Entity #9 | Chains: I
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 116 221
95 % 8 116 309
90 % 8 116 325
70 % 8 119 339
50 % 8 121 389
40 % 8 121 416
30 % 8 124 409

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.