Sequence Similarity Clusters for the Entities in PDB 4A3E

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1732 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 115 220
95 % 8 115 307
90 % 8 115 323
70 % 8 115 361
50 % 8 126 368
40 % 8 126 399
30 % 8 126 399
Entity #10 | Chains: J
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 133 179
95 % 9 133 239
90 % 9 133 252
70 % 9 144 266
50 % 9 152 260
40 % 9 152 284
30 % 9 152 287
Entity #11 | Chains: K
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 117 215
95 % 8 117 299
90 % 8 117 315
70 % 8 117 351
50 % 8 117 413
40 % 8 119 430
30 % 8 119 435
Entity #12 | Chains: L
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 129 183
95 % 9 129 251
90 % 9 129 260
70 % 9 129 294
50 % 9 129 331
40 % 9 129 357
30 % 9 129 366
Entity #13 | Chains: N
NON TEMPLATE DNA 5'-D(*TP*AP*AP*GP*TP*AP*CP*TP*TP*GP*AP *GP*CP*TP)-3' dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #14 | Chains: P
TRANSCRIPT RNA 5'-R(*CP*AP*GP*GP*AP)-3' rna, length: 5 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #15 | Chains: T
TEMPLATE DNA 5'-D(*AP*GP*CP*TP*CP*AP*AP*GP*TP*AP*CP*TP*TP *TP*TP*TP*CP*CP*BRU*GP*GP*TP*CP*AP*TP*TP)-3' dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 116 218
95 % 8 117 296
90 % 8 117 311
70 % 8 117 348
50 % 8 128 353
40 % 8 136 325
30 % 8 139 327
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 112 223
95 % 8 112 311
90 % 8 112 329
70 % 8 112 368
50 % 8 114 417
40 % 8 114 450
30 % 8 114 447
Entity #4 | Chains: D
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 61 536
95 % 3 61 749
90 % 3 61 778
70 % 3 62 803
50 % 3 64 813
40 % 3 64 845
30 % 3 64 832
Entity #5 | Chains: E
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 134 177
95 % 10 134 235
90 % 10 134 247
70 % 10 134 283
50 % 10 136 310
40 % 10 145 305
30 % 10 145 319
Entity #6 | Chains: F
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 128 186
95 % 9 128 254
90 % 9 128 264
70 % 9 128 296
50 % 9 140 301
40 % 9 140 320
30 % 9 140 325
Entity #7 | Chains: G
RPB7, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 64 481
95 % 4 64 673
90 % 4 64 702
70 % 4 64 748
50 % 5 76 599
40 % 5 76 628
30 % 5 76 640
Entity #8 | Chains: H
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 9 133 178
95 % 9 134 236
90 % 9 134 248
70 % 9 134 284
50 % 9 134 315
40 % 9 134 337
30 % 9 146 317
Entity #9 | Chains: I
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 8 116 219
95 % 8 116 306
90 % 8 116 322
70 % 8 116 359
50 % 8 118 406
40 % 8 118 434
30 % 8 121 424

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.