Sequence Similarity Clusters for the Entities in PDB 4A3D

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1732 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 115 222
95 % 10 115 310
90 % 10 115 326
70 % 10 118 342
50 % 10 129 341
40 % 10 129 370
30 % 10 129 378
Entity #10 | Chains: J
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 137 178
95 % 12 137 235
90 % 12 137 249
70 % 12 151 255
50 % 12 159 246
40 % 12 159 267
30 % 12 159 275
Entity #11 | Chains: K
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 117 217
95 % 10 117 304
90 % 10 117 320
70 % 10 117 357
50 % 10 120 398
40 % 10 122 412
30 % 10 122 418
Entity #12 | Chains: L
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 133 180
95 % 12 133 245
90 % 12 133 257
70 % 12 133 288
50 % 12 136 313
40 % 12 136 328
30 % 12 136 340
Entity #13 | Chains: N
NON TEMPLATE DNA 5'-D(*TP*AP*AP*GP*TP*AP*CP*TP*TP *GP*AP*GP*CP*TP)-3' dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #14 | Chains: P
TRANSCRIPT RNA 5'-R(*CP*CP*AP*GP*GP*AP)-3' rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #15 | Chains: T
TEMPLATE DNA 5'-D(*AP*GP*CP*TP*CP*AP*AP*GP*TP*AP*CP *TP*TP*TP*TP*TP*CP*CP*TP*BRUP*GP*GP*TP*CP*AP*TP*TP)-3' dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 116 220
95 % 10 117 300
90 % 10 117 315
70 % 10 122 324
50 % 10 131 336
40 % 10 139 317
30 % 10 142 326
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 112 226
95 % 10 112 314
90 % 10 112 333
70 % 10 112 371
50 % 10 114 419
40 % 10 114 456
30 % 10 114 453
Entity #4 | Chains: D
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 61 548
95 % 4 61 760
90 % 4 61 788
70 % 4 62 816
50 % 4 67 741
40 % 4 67 777
30 % 4 67 767
Entity #5 | Chains: E
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 138 174
95 % 13 138 231
90 % 13 138 243
70 % 13 141 274
50 % 13 143 294
40 % 13 152 295
30 % 13 152 307
Entity #6 | Chains: F
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 132 183
95 % 12 132 249
90 % 12 132 261
70 % 12 132 289
50 % 12 147 286
40 % 12 147 304
30 % 12 147 318
Entity #7 | Chains: G
RPB7, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 64 488
95 % 5 64 683
90 % 5 64 711
70 % 5 64 763
50 % 6 79 562
40 % 6 79 606
30 % 6 79 604
Entity #8 | Chains: H
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 137 177
95 % 12 138 232
90 % 12 138 244
70 % 12 138 279
50 % 12 141 301
40 % 12 141 315
30 % 12 153 304
Entity #9 | Chains: I
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 116 221
95 % 10 116 309
90 % 10 116 325
70 % 10 119 339
50 % 10 121 390
40 % 10 121 417
30 % 10 124 411

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.