Sequence Similarity Clusters for the Entities in PDB 4A3D

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1732 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 114 206
95 % 10 114 291
90 % 10 114 304
70 % 10 114 329
50 % 10 124 328
40 % 10 124 354
30 % 10 124 361
Entity #10 | Chains: J
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 125 174
95 % 12 125 238
90 % 12 125 248
70 % 12 135 258
50 % 12 143 253
40 % 12 143 272
30 % 12 143 288
Entity #11 | Chains: K
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 116 202
95 % 10 116 287
90 % 10 116 299
70 % 10 116 324
50 % 10 116 353
40 % 10 117 378
30 % 10 117 383
Entity #12 | Chains: L
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 121 181
95 % 12 121 251
90 % 12 121 259
70 % 12 121 297
50 % 12 121 324
40 % 12 121 348
30 % 12 121 354
Entity #13 | Chains: N
NON TEMPLATE DNA 5'-D(*TP*AP*AP*GP*TP*AP*CP*TP*TP *GP*AP*GP*CP*TP)-3' dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #14 | Chains: P
TRANSCRIPT RNA 5'-R(*CP*CP*AP*GP*GP*AP)-3' rna, length: 6 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #15 | Chains: T
TEMPLATE DNA 5'-D(*AP*GP*CP*TP*CP*AP*AP*GP*TP*AP*CP *TP*TP*TP*TP*TP*CP*CP*TP*BRUP*GP*GP*TP*CP*AP*TP*TP)-3' dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 115 203
95 % 10 116 284
90 % 10 116 295
70 % 10 116 321
50 % 10 126 322
40 % 10 134 310
30 % 10 137 311
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 111 209
95 % 10 111 299
90 % 10 111 314
70 % 10 111 335
50 % 10 112 360
40 % 10 112 396
30 % 10 112 396
Entity #4 | Chains: D
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 4 60 443
95 % 4 60 650
90 % 4 60 689
70 % 4 61 712
50 % 4 63 749
40 % 4 63 786
30 % 4 63 788
Entity #5 | Chains: E
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 13 126 169
95 % 13 126 234
90 % 13 126 244
70 % 13 126 274
50 % 13 127 307
40 % 13 136 303
30 % 13 136 319
Entity #6 | Chains: F
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 120 184
95 % 12 120 254
90 % 12 120 262
70 % 12 120 299
50 % 12 131 293
40 % 12 131 316
30 % 12 131 332
Entity #7 | Chains: G
RPB7, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 63 395
95 % 5 63 585
90 % 5 63 616
70 % 5 63 659
50 % 6 74 570
40 % 6 74 606
30 % 6 74 615
Entity #8 | Chains: H
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 12 125 173
95 % 12 126 235
90 % 12 126 245
70 % 12 126 277
50 % 12 126 314
40 % 12 126 336
30 % 12 137 314
Entity #9 | Chains: I
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 115 205
95 % 10 115 290
90 % 10 115 303
70 % 10 115 328
50 % 10 116 350
40 % 10 116 382
30 % 10 119 378

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.