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RNA POLYMERASE II INITIAL TRANSCRIBING COMPLEX WITH A 5NT DNA-RNA HYBRID
Sequence Clustering and Redundancy Reduction Results
4A3C
Sequence Clusters for the Sequence Entities in PDB 4A3C
Entity #1: Chains: A - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1732 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 101 206
95% 18 101 289
90% 18 101 304
70% 18 101 323
50% 18 102 348
40% 18 102 375
30% 18 102 381
Entity #10: Chains: J - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 107 188
95% 20 107 265
90% 20 107 277
70% 20 108 288
50% 20 116 275
40% 20 116 305
30% 20 116 321
Entity #11: Chains: K - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 103 201
95% 18 103 285
90% 18 103 300
70% 18 103 317
50% 18 103 352
40% 18 104 369
30% 18 104 375
Entity #12: Chains: L - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 106 190
95% 20 106 267
90% 20 106 281
70% 20 106 299
50% 20 106 327
40% 20 106 356
30% 20 106 364
Entity #13: Chains: N - NON TEMPLATE DNA dna, length: 14 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #14: Chains: P - TRANSCRIPT RNA, 5'-R(*CP*AP*GP*GP*AP)-3' rna, length: 5 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #15: Chains: T - TEMPLATE DNA dna, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: B - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 102 203
95% 18 103 282
90% 18 103 296
70% 18 103 315
50% 18 104 339
40% 18 112 319
30% 18 112 330
Entity #3: Chains: C - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 101 207
95% 18 101 291
90% 18 101 306
70% 18 101 325
50% 18 102 350
40% 18 102 378
30% 18 102 385
Entity #4: Chains: D - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 51 451
95% 8 51 653
90% 8 51 685
70% 8 52 728
50% 8 52 816
40% 8 52 835
30% 8 52 841
Entity #5: Chains: E - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 21 108 186
95% 21 108 258
90% 21 108 271
70% 21 108 290
50% 21 109 309
40% 21 109 336
30% 21 109 348
Entity #6: Chains: F - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 105 194
95% 20 105 276
90% 20 105 288
70% 20 105 306
50% 20 107 319
40% 20 107 350
30% 20 107 355
Entity #7: Chains: G - RPB7, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 53 426
95% 9 53 622
90% 9 53 652
70% 9 53 702
50% 10 55 692
40% 10 55 718
30% 10 55 719
Entity #8: Chains: H - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 107 187
95% 20 108 259
90% 20 108 272
70% 20 108 291
50% 20 108 320
40% 20 108 351
30% 20 110 346
Entity #9: Chains: I - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 102 205
95% 18 102 288
90% 18 102 303
70% 18 102 322
50% 18 103 346
40% 18 103 373
30% 18 103 379
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.