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An Information Portal to 105212 Biological Macromolecular Structures

RNA POLYMERASE II INITIAL TRANSCRIBING COMPLEX WITH A 5NT DNA-RNA HYBRID
Sequence Clustering and Redundancy Reduction Results
4A3C
Sequence Clusters for the Sequence Entities in PDB 4A3C
Entity #1: Chains: A - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1732 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 96 207
95% 18 96 291
90% 18 96 308
70% 18 96 325
50% 18 97 349
40% 18 97 372
30% 18 97 386
Entity #10: Chains: J - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 102 189
95% 20 102 268
90% 20 102 280
70% 20 103 293
50% 20 112 274
40% 20 112 304
30% 20 112 318
Entity #11: Chains: K - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 98 203
95% 18 98 286
90% 18 98 303
70% 18 98 318
50% 18 98 358
40% 18 99 368
30% 18 99 380
Entity #12: Chains: L - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 101 191
95% 20 101 273
90% 20 101 285
70% 20 101 303
50% 20 101 339
40% 20 101 361
30% 20 101 375
Entity #13: Chains: N - NON TEMPLATE DNA dna, length: 14 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #14: Chains: P - TRANSCRIPT RNA, 5'-R(*CP*AP*GP*GP*AP)-3' rna, length: 5 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #15: Chains: T - TEMPLATE DNA dna, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: B - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 97 204
95% 18 98 283
90% 18 98 299
70% 18 98 316
50% 18 99 342
40% 18 108 313
30% 18 108 328
Entity #3: Chains: C - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 96 209
95% 18 96 292
90% 18 96 309
70% 18 96 326
50% 18 97 352
40% 18 97 374
30% 18 97 388
Entity #4: Chains: D - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 49 459
95% 8 49 659
90% 8 49 694
70% 8 50 734
50% 8 50 821
40% 8 50 838
30% 8 50 837
Entity #5: Chains: E - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 21 103 183
95% 21 103 261
90% 21 103 273
70% 21 103 297
50% 21 104 318
40% 21 104 343
30% 21 104 354
Entity #6: Chains: F - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 100 193
95% 20 100 277
90% 20 100 289
70% 20 100 309
50% 20 102 330
40% 20 102 353
30% 20 102 365
Entity #7: Chains: G - RPB7, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 51 420
95% 9 51 614
90% 9 51 647
70% 9 51 697
50% 10 53 681
40% 10 53 714
30% 10 53 713
Entity #8: Chains: H - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 102 186
95% 20 103 263
90% 20 103 276
70% 20 103 298
50% 20 103 331
40% 20 103 354
30% 20 105 349
Entity #9: Chains: I - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 97 205
95% 18 97 289
90% 18 97 306
70% 18 97 322
50% 18 98 348
40% 18 98 371
30% 18 98 385
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.