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An Information Portal to 107049 Biological Macromolecular Structures

RNA POLYMERASE II INITIAL TRANSCRIBING COMPLEX WITH A 5NT DNA-RNA HYBRID
Sequence Clustering and Redundancy Reduction Results
4A3C
Sequence Clusters for the Sequence Entities in PDB 4A3C
Entity #1: Chains: A - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1732 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 101 202
95% 18 101 285
90% 18 101 299
70% 18 101 315
50% 18 102 346
40% 18 102 369
30% 18 102 376
Entity #10: Chains: J - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 107 178
95% 20 107 253
90% 20 107 265
70% 20 108 270
50% 20 116 274
40% 20 116 302
30% 20 116 317
Entity #11: Chains: K - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 103 197
95% 18 103 278
90% 18 103 292
70% 18 103 309
50% 18 103 351
40% 18 104 364
30% 18 104 371
Entity #12: Chains: L - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 protein, length: 70 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 106 185
95% 20 106 261
90% 20 106 275
70% 20 106 292
50% 20 106 325
40% 20 106 349
30% 20 106 358
Entity #13: Chains: N - NON TEMPLATE DNA dna, length: 14 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #14: Chains: P - TRANSCRIPT RNA, 5'-R(*CP*AP*GP*GP*AP)-3' rna, length: 5 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #15: Chains: T - TEMPLATE DNA dna, length: 26 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #2: Chains: B - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 102 199
95% 18 103 274
90% 18 103 287
70% 18 103 306
50% 18 104 338
40% 18 112 313
30% 18 112 322
Entity #3: Chains: C - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 101 203
95% 18 101 287
90% 18 101 301
70% 18 101 317
50% 18 102 348
40% 18 102 372
30% 18 102 380
Entity #4: Chains: D - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 8 51 440
95% 8 51 639
90% 8 51 672
70% 8 52 717
50% 8 52 804
40% 8 52 825
30% 8 52 830
Entity #5: Chains: E - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 protein, length: 215 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 21 108 167
95% 21 108 240
90% 21 108 252
70% 21 108 274
50% 21 109 302
40% 21 109 325
30% 21 109 342
Entity #6: Chains: F - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 protein, length: 155 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 20 105 190
95% 20 105 269
90% 20 105 281
70% 20 105 297
50% 20 107 312
40% 20 107 339
30% 20 107 348
Entity #7: Chains: G - RPB7, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 9 53 418
95% 9 53 605
90% 9 53 635
70% 9 53 690
50% 10 55 677
40% 10 55 705
30% 10 55 703
Entity #8: Chains: H - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 protein, length: 146 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 19 107 172
95% 20 108 241
90% 20 108 254
70% 20 108 275
50% 20 108 313
40% 20 108 340
30% 20 110 341
Entity #9: Chains: I - DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 18 102 201
95% 18 102 284
90% 18 102 298
70% 18 102 314
50% 18 103 344
40% 18 103 367
30% 18 103 374
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.