Sequence Similarity Clusters for the Entities in PDB 4A3B

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1732 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 113 206
95 % 28 113 288
90 % 28 113 302
70 % 28 113 325
50 % 28 123 325
40 % 28 123 350
30 % 28 123 360
Entity #10 | Chains: J
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 124 175
95 % 30 124 241
90 % 30 124 251
70 % 30 134 245
50 % 30 142 249
40 % 30 142 272
30 % 30 142 287
Entity #11 | Chains: K
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 115 203
95 % 28 115 285
90 % 28 115 299
70 % 28 115 323
50 % 28 115 350
40 % 28 116 369
30 % 28 116 379
Entity #12 | Chains: L
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 120 181
95 % 29 120 251
90 % 29 120 260
70 % 29 120 295
50 % 29 120 323
40 % 29 120 348
30 % 29 120 357
Entity #13 | Chains: N
NON TEMPLATE DNA 5'-D(*TP*AP*AP*GP*TP*AP*CP*TP*TP*GP*AP*GP*CP*TP)-3' dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #14 | Chains: P
TRANSCRIPT RNA 5'-R(*AP*GP*GP*A)-3' rna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #15 | Chains: T
TEMPLATE DNA dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 114 204
95 % 28 115 281
90 % 28 115 295
70 % 28 115 319
50 % 28 125 319
40 % 28 133 303
30 % 28 136 306
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 110 209
95 % 27 110 297
90 % 27 110 312
70 % 27 110 332
50 % 27 111 355
40 % 27 111 387
30 % 27 111 392
Entity #4 | Chains: D
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 59 441
95 % 14 59 649
90 % 14 59 693
70 % 14 60 705
50 % 14 62 754
40 % 14 62 787
30 % 14 62 793
Entity #5 | Chains: E
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 125 169
95 % 31 125 234
90 % 31 125 246
70 % 31 125 277
50 % 31 126 306
40 % 31 135 299
30 % 31 135 313
Entity #6 | Chains: F
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 119 185
95 % 29 119 252
90 % 29 119 261
70 % 29 119 298
50 % 29 130 292
40 % 29 130 315
30 % 29 130 330
Entity #7 | Chains: G
RPB7, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 62 394
95 % 15 62 578
90 % 15 62 608
70 % 15 62 656
50 % 16 73 573
40 % 16 73 605
30 % 16 73 615
Entity #8 | Chains: H
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 124 174
95 % 30 125 235
90 % 30 125 247
70 % 30 125 279
50 % 30 125 315
40 % 30 125 334
30 % 30 136 309
Entity #9 | Chains: I
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 114 205
95 % 28 114 287
90 % 28 114 301
70 % 28 114 324
50 % 28 115 345
40 % 28 115 373
30 % 28 118 376

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.