Sequence Similarity Clusters for the Entities in PDB 4A3B

Entity #1 | Chains: A
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1 protein, length: 1732 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 114 209
95 % 28 114 295
90 % 28 114 308
70 % 28 114 336
50 % 28 124 331
40 % 28 124 359
30 % 28 124 366
Entity #10 | Chains: J
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 5 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 30 127 174
95 % 30 127 240
90 % 30 127 248
70 % 30 137 265
50 % 30 145 260
40 % 30 145 279
30 % 30 145 291
Entity #11 | Chains: K
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB11 protein, length: 120 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 116 204
95 % 28 116 291
90 % 28 116 303
70 % 28 116 330
50 % 28 116 369
40 % 28 117 390
30 % 28 117 391
Entity #12 | Chains: L
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 4 protein, length: 70 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 123 181
95 % 29 123 253
90 % 29 123 261
70 % 29 123 297
50 % 29 123 325
40 % 29 123 348
30 % 29 123 355
Entity #13 | Chains: N
NON TEMPLATE DNA 5'-D(*TP*AP*AP*GP*TP*AP*CP*TP*TP*GP*AP*GP*CP*TP)-3' dna, length: 14 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #14 | Chains: P
TRANSCRIPT RNA 5'-R(*AP*GP*GP*A)-3' rna, length: 4 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #15 | Chains: T
TEMPLATE DNA dna, length: 26 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: B
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB2 protein, length: 1224 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 115 205
95 % 28 116 286
90 % 28 116 297
70 % 28 116 326
50 % 28 126 328
40 % 28 134 315
30 % 28 137 320
Entity #3 | Chains: C
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB3 protein, length: 318 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 27 111 211
95 % 27 111 303
90 % 27 111 317
70 % 27 111 343
50 % 27 112 388
40 % 27 112 427
30 % 27 112 419
Entity #4 | Chains: D
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4 protein, length: 221 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 14 60 491
95 % 14 60 696
90 % 14 60 726
70 % 14 61 749
50 % 14 63 770
40 % 14 63 801
30 % 14 63 801
Entity #5 | Chains: E
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 1 protein, length: 215 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 31 128 172
95 % 31 128 236
90 % 31 128 246
70 % 31 128 278
50 % 31 129 308
40 % 31 138 306
30 % 31 138 318
Entity #6 | Chains: F
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 2 protein, length: 155 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 122 184
95 % 29 122 256
90 % 29 122 262
70 % 29 122 300
50 % 29 133 300
40 % 29 133 321
30 % 29 133 332
Entity #7 | Chains: G
RPB7, DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB7 protein, length: 171 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 15 63 445
95 % 15 63 635
90 % 15 63 671
70 % 15 63 710
50 % 16 74 584
40 % 16 74 621
30 % 16 74 629
Entity #8 | Chains: H
DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC 3 protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 29 127 173
95 % 30 128 237
90 % 30 128 247
70 % 30 128 279
50 % 30 128 314
40 % 30 128 335
30 % 30 139 314
Entity #9 | Chains: I
DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB9 protein, length: 122 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 28 115 207
95 % 28 115 294
90 % 28 115 307
70 % 28 115 335
50 % 28 116 364
40 % 28 116 398
30 % 28 119 384

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.