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Crystal structure of the hybrid state of ribosome in complex with the guanosine triphosphatase release factor 3
Sequence Clustering and Redundancy Reduction Results
3ZVO
Sequence Clusters for the Sequence Entities in PDB 3ZVO
Entity #1: Chains: A - 16S RRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 226 252 29
95% 228 254 48
90% 228 254 51
70% 228 254 63
50% 300 369 34
40% 300 369 48
30% 300 374 67
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 228 255 27
95% 228 255 44
90% 228 255 47
70% 228 255 59
50% 294 363 42
40% 304 403 39
30% 304 403 53
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 190 224 37
95% 228 262 36
90% 228 262 38
70% 294 375 24
50% 294 375 33
40% 294 375 47
30% 294 375 71
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 228 256 24
95% 228 256 42
90% 228 256 45
70% 228 256 57
50% 294 365 39
40% 294 365 53
30% 302 401 57
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 TYPE Z protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 228 254 28
95% 228 254 49
90% 228 254 52
70% 228 254 64
50% 228 254 99
40% 228 254 124
30% 228 254 144
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 228 258 21
95% 233 263 35
90% 233 263 37
70% 233 263 48
50% 302 376 32
40% 302 376 45
30% 302 376 69
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 228 250 31
95% 228 255 46
90% 228 255 49
70% 228 255 61
50% 228 255 97
40% 228 255 122
30% 294 363 78
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 152 157 62
95% 223 249 51
90% 227 253 53
70% 227 253 65
50% 227 253 100
40% 227 253 126
30% 227 253 146
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 168 172 49
95% 205 221 64
90% 205 221 68
70% 205 221 81
50% 205 221 116
40% 205 221 144
30% 205 221 166
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 205 223 38
95% 205 223 63
90% 205 223 67
70% 205 223 80
50% 296 366 38
40% 296 366 52
30% 296 366 75
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 228 255 25
95% 228 256 39
90% 228 256 43
70% 228 256 55
50% 228 256 96
40% 294 363 55
30% 294 363 77
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 185 193 43
95% 228 254 47
90% 228 254 50
70% 228 254 62
50% 228 254 98
40% 228 254 123
30% 228 254 143
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 221 238 34
95% 221 238 55
90% 221 238 59
70% 221 238 71
50% 221 238 110
40% 221 238 133
30% 221 238 153
Entity #22: Chains: V - PE HYBRID STATE TRNA FMET rna, length: 77 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: X - MRNA 5'-R(*AP*AP*AP*AP*AP*AP*UP*GP*UP)-3' rna, length: 9 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #24: Chains: Y - PEPTIDE CHAIN RELEASE FACTOR 3 protein, length: 529 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 5 8010
95% 4 5 8195
90% 4 5 8120
70% 4 5 7778
50% 7 8 2457
40% 7 8 2450
30% 7 8 2294
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 203 219 39
95% 203 219 66
90% 203 219 70
70% 203 219 83
50% 245 282 81
40% 245 282 101
30% 245 282 123
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 226 248 32
95% 229 256 40
90% 229 256 44
70% 229 256 56
50% 295 363 40
40% 295 364 54
30% 295 364 76
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 229 255 26
95% 229 255 43
90% 229 255 46
70% 229 255 58
50% 296 367 37
40% 296 367 51
30% 296 369 72
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 231 260 18
95% 237 266 34
90% 237 266 36
70% 237 266 47
50% 237 266 88
40% 237 266 112
30% 263 313 95
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 230 259 20
95% 230 260 37
90% 230 260 39
70% 230 260 51
50% 257 308 57
40% 257 309 74
30% 257 309 97
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 226 255 23
95% 226 255 41
90% 230 259 40
70% 230 259 52
50% 298 369 36
40% 299 371 49
30% 308 408 50
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 93 113 134
95% 228 255 45
90% 228 255 48
70% 228 255 60
50% 294 363 41
40% 294 363 56
30% 302 399 59
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.