POP-OUT | CLOSE
 
Crystal structure of the hybrid state of ribosome in complex with the guanosine triphosphatase release factor 3
Sequence Clustering and Redundancy Reduction Results
3ZVO
Sequence Clusters for the Sequence Entities in PDB 3ZVO
Entity #1: Chains: A - 16S RRNA rna, length: 1522 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #10: Chains: J - 30S RIBOSOMAL PROTEIN S10 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 229 257 29
95% 231 259 47
90% 231 259 51
70% 231 259 61
50% 303 374 34
40% 303 374 46
30% 303 379 66
Entity #11: Chains: K - 30S RIBOSOMAL PROTEIN S11 protein, length: 129 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 231 260 26
95% 231 260 43
90% 231 260 46
70% 231 260 57
50% 297 368 42
40% 307 408 40
30% 307 408 53
Entity #12: Chains: L - 30S RIBOSOMAL PROTEIN S12 protein, length: 135 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 193 229 36
95% 231 267 36
90% 231 267 38
70% 297 380 24
50% 297 380 33
40% 297 380 45
30% 297 380 69
Entity #13: Chains: M - 30S RIBOSOMAL PROTEIN S13 protein, length: 126 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 231 261 22
95% 231 261 41
90% 231 261 43
70% 231 261 55
50% 297 370 39
40% 297 370 53
30% 305 406 57
Entity #14: Chains: N - 30S RIBOSOMAL PROTEIN S14 TYPE Z protein, length: 61 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 231 259 27
95% 231 259 48
90% 231 259 52
70% 231 259 62
50% 231 259 97
40% 231 259 123
30% 231 259 141
Entity #15: Chains: O - 30S RIBOSOMAL PROTEIN S15 protein, length: 89 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 231 263 20
95% 236 268 35
90% 236 268 37
70% 236 268 48
50% 305 381 32
40% 305 381 43
30% 305 381 68
Entity #16: Chains: P - 30S RIBOSOMAL PROTEIN S16 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 231 255 30
95% 231 260 45
90% 231 260 48
70% 231 260 59
50% 231 260 94
40% 231 260 120
30% 297 368 78
Entity #17: Chains: Q - 30S RIBOSOMAL PROTEIN S17 protein, length: 105 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 155 162 57
95% 226 254 50
90% 230 258 53
70% 230 258 63
50% 230 258 99
40% 230 258 124
30% 230 258 142
Entity #18: Chains: R - 30S RIBOSOMAL PROTEIN S18 protein, length: 88 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 171 175 50
95% 208 224 63
90% 208 224 67
70% 208 224 81
50% 208 224 115
40% 208 224 141
30% 208 224 162
Entity #19: Chains: S - 30S RIBOSOMAL PROTEIN S19 protein, length: 93 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 208 226 37
95% 208 226 62
90% 208 226 65
70% 208 226 80
50% 299 371 38
40% 299 371 51
30% 299 371 75
Entity #2: Chains: B - 30S RIBOSOMAL PROTEIN S2 protein, length: 256 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 231 260 24
95% 231 261 38
90% 231 261 41
70% 231 261 52
50% 231 261 92
40% 297 368 55
30% 297 368 77
Entity #20: Chains: T - 30S RIBOSOMAL PROTEIN S20 protein, length: 106 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 188 198 43
95% 231 259 46
90% 231 259 50
70% 231 259 60
50% 231 259 96
40% 231 259 122
30% 231 259 140
Entity #21: Chains: U - 30S RIBOSOMAL PROTEIN THX protein, length: 27 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 224 241 34
95% 224 241 55
90% 224 241 58
70% 224 241 69
50% 224 241 107
40% 224 241 130
30% 224 241 151
Entity #22: Chains: V - PE HYBRID STATE TRNA FMET rna, length: 77 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #23: Chains: X - MRNA 5'-R(*AP*AP*AP*AP*AP*AP*UP*GP*UP)-3' rna, length: 9 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
Entity #24: Chains: Y - PEPTIDE CHAIN RELEASE FACTOR 3 protein, length: 529 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 4 5 8040
95% 4 5 8226
90% 4 5 8152
70% 4 5 7807
50% 7 8 2469
40% 7 8 2458
30% 7 8 2299
Entity #3: Chains: C - 30S RIBOSOMAL PROTEIN S3 protein, length: 239 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 206 222 39
95% 206 222 65
90% 206 222 69
70% 206 222 82
50% 248 285 76
40% 248 285 100
30% 248 285 124
Entity #4: Chains: D - 30S RIBOSOMAL PROTEIN S4 protein, length: 209 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 229 253 31
95% 232 261 39
90% 232 261 42
70% 232 261 53
50% 298 368 40
40% 298 369 54
30% 298 369 76
Entity #5: Chains: E - 30S RIBOSOMAL PROTEIN S5 protein, length: 162 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 232 260 25
95% 232 260 42
90% 232 260 44
70% 232 260 56
50% 299 372 37
40% 299 372 50
30% 299 374 72
Entity #6: Chains: F - 30S RIBOSOMAL PROTEIN S6 protein, length: 101 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 234 265 18
95% 240 271 33
90% 240 271 35
70% 240 271 47
50% 240 271 87
40% 240 271 112
30% 266 318 94
Entity #7: Chains: G - 30S RIBOSOMAL PROTEIN S7 protein, length: 156 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 233 264 19
95% 233 265 37
90% 233 265 39
70% 233 265 49
50% 260 313 56
40% 260 314 72
30% 260 314 96
Entity #8: Chains: H - 30S RIBOSOMAL PROTEIN S8 protein, length: 138 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 229 260 21
95% 229 260 40
90% 233 264 40
70% 233 264 50
50% 301 374 35
40% 302 376 47
30% 311 413 52
Entity #9: Chains: I - 30S RIBOSOMAL PROTEIN S9 protein, length: 128 [Blast  ]
Cluster Sequence Similarity Cutoff Rank   Nr. of chains in Cluster Cluster Nr.  
100% 93 113 134
95% 231 260 44
90% 231 260 47
70% 231 260 58
50% 297 368 41
40% 297 368 56
30% 305 404 58
 

Documentation

Click here for more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB.