Sequence Similarity Clusters for the Entities in PDB 3ZTC

Entity #1 | Chains: A,D,G,J
TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 2 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 21 992
95 % 12 21 1200 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 12 21 1224
70 % 12 21 1249
50 % 12 21 1292
40 % 12 21 1286
30 % 12 21 1282
Entity #2 | Chains: B,E,H,K
TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 1 protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 41 52 188
95 % 41 52 244 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.6
PDBFlex
90 % 41 52 252
70 % 41 52 285
50 % 41 52 327
40 % 41 53 354
30 % 41 53 354
Entity #3 | Chains: C,F,I,L
VON HIPPEL-LINDAU DISEASE TUMOR SUPPRESSOR protein, length: 163 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 38 223
95 % 33 38 288 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.5
PDBFlex
90 % 33 38 300
70 % 33 38 345
50 % 33 38 415
40 % 33 38 439
30 % 33 38 449

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures