Sequence Similarity Clusters for the Entities in PDB 3ZRF

Entity #1 | Chains: A,D,G,J
TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 2 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 18 919
95 % 15 20 1176 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 15 20 1203
70 % 15 20 1239
50 % 15 20 1293
40 % 15 20 1307
30 % 15 20 1283
Entity #2 | Chains: B,E,H,K
TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 1 protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 40 47 172
95 % 40 48 231 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.7
PDBFlex
90 % 40 48 246
70 % 40 48 278
50 % 40 48 312
40 % 40 48 330
30 % 40 49 336
Entity #3 | Chains: C,F,I,L
VON HIPPEL-LINDAU DISEASE TUMOR SUPPRESSOR, protein, length: 163 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 35 212
95 % 33 35 295 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.5
PDBFlex
90 % 33 35 306
70 % 33 35 353
50 % 33 35 415
40 % 33 35 442
30 % 33 35 442

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.