Sequence Similarity Clusters for the Entities in PDB 3ZRF

Entity #1 | Chains: A,D,G,J
TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 2 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 14 18 968
95 % 15 20 1236 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 15 20 1261
70 % 15 20 1292
50 % 15 20 1352
40 % 15 20 1361
30 % 15 20 1336
Entity #2 | Chains: B,E,H,K
TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 1 protein, length: 97 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 43 50 176
95 % 43 51 238 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.7
PDBFlex
90 % 43 51 250
70 % 43 51 282
50 % 43 51 323
40 % 43 51 338
30 % 43 52 338
Entity #3 | Chains: C,F,I,L
VON HIPPEL-LINDAU DISEASE TUMOR SUPPRESSOR, protein, length: 163 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 36 38 205
95 % 36 38 284 Flexibility: Low
Max RMSD: 1.1, Avg RMSD: 0.5
PDBFlex
90 % 36 38 297
70 % 36 38 344
50 % 36 38 412
40 % 36 38 431
30 % 36 38 433

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures