Sequence Similarity Clusters for the Entities in PDB 3ZKJ

Entity #1 | Chains: A,D
ANKYRIN REPEAT AND SOCS BOX PROTEIN 9 protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 19475
95 % 1 2 17180 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 1 2 16825
70 % 1 2 15653
50 % 1 2 13678
40 % 1 2 12246
30 % 1 2 10511
Entity #2 | Chains: B,E
TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 1 protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 27 39 218
95 % 27 40 303 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.7
PDBFlex
90 % 27 40 318
70 % 27 40 361
50 % 27 40 428
40 % 27 40 454
30 % 27 41 451
Entity #3 | Chains: C,F
TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 2 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 18 909
95 % 10 20 1160 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 10 20 1186
70 % 10 20 1225
50 % 10 20 1279
40 % 10 20 1293
30 % 10 20 1269

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.