Sequence Similarity Clusters for the Entities in PDB 3ZKJ

Entity #1 | Chains: A,D
ANKYRIN REPEAT AND SOCS BOX PROTEIN 9 protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 20447
95 % 1 2 17977 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 1 2 17612
70 % 1 2 16367
50 % 1 2 14275
40 % 1 2 12769
30 % 1 2 10966
Entity #2 | Chains: B,E
TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 1 protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 47 184
95 % 33 48 245 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.7
PDBFlex
90 % 33 48 261
70 % 33 48 295
50 % 33 48 344
40 % 33 48 362
30 % 33 49 362
Entity #3 | Chains: C,F
TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 2 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 18 954
95 % 10 20 1216 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 10 20 1243
70 % 10 20 1275
50 % 10 20 1334
40 % 10 20 1344
30 % 10 20 1321

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures