Sequence Similarity Clusters for the Entities in PDB 3ZKJ

Entity #1 | Chains: A,D
ANKYRIN REPEAT AND SOCS BOX PROTEIN 9 protein, length: 261 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 20052
95 % 1 2 17673 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.7
PDBFlex
90 % 1 2 17320
70 % 1 2 16111
50 % 1 2 14054
40 % 1 2 12577
30 % 1 2 10802
Entity #2 | Chains: B,E
TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 1 protein, length: 96 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 33 47 178
95 % 33 48 238 Flexibility: Low
Max RMSD: 2.4, Avg RMSD: 0.7
PDBFlex
90 % 33 48 253
70 % 33 48 286
50 % 33 48 321
40 % 33 48 339
30 % 33 49 343
Entity #3 | Chains: C,F
TRANSCRIPTION ELONGATION FACTOR B POLYPEPTIDE 2 protein, length: 118 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 18 938
95 % 10 20 1192 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.8
PDBFlex
90 % 10 20 1220
70 % 10 20 1257
50 % 10 20 1313
40 % 10 20 1321
30 % 10 20 1294

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.