Sequence Similarity Clusters for the Entities in PDB 3ZIA

Entity #1 | Chains: A,B,C,K,L,M
ATP SYNTHASE SUBUNIT ALPHA, MITOCHONDRIAL protein, length: 510 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 13 510
95 % 1 15 524 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.9
PDBFlex
90 % 1 15 552
70 % 11 62 169
50 % 12 74 169
40 % 12 74 183
30 % 12 74 195
Entity #2 | Chains: D,E,F,N,O,P
ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL protein, length: 478 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 14 436
95 % 1 15 525 Flexibility: Low
Max RMSD: 4.1, Avg RMSD: 2.0
PDBFlex
90 % 1 18 488
70 % 12 75 143
50 % 12 76 168
40 % 12 76 181
30 % 12 76 193
Entity #3 | Chains: G,Q
ATP SYNTHASE SUBUNIT GAMMA, MITOCHONDRIAL protein, length: 278 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 12 1859
95 % 1 13 2153 Flexibility: Low
Max RMSD: 2.6, Avg RMSD: 1.3
PDBFlex
90 % 1 13 2205
70 % 1 13 2209
50 % 1 18 1831
40 % 10 68 620
30 % 10 68 609
Entity #4 | Chains: H,R
ATP SYNTHASE SUBUNIT DELTA, MITOCHONDRIAL protein, length: 138 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 13 1729
95 % 1 13 2290 Flexibility: Low
Max RMSD: 3.6, Avg RMSD: 1.8
PDBFlex
90 % 1 13 2349
70 % 1 13 2348
50 % 1 16 2073
40 % 1 16 2066
30 % 6 32 1246
Entity #5 | Chains: I,S
ATP SYNTHASE SUBUNIT EPSILON, MITOCHONDRIAL protein, length: 61 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 11 2139
95 % 1 14 2227 Flexibility: Low
Max RMSD: 3.7, Avg RMSD: 1.6
PDBFlex
90 % 1 14 2283
70 % 1 14 2277
50 % 1 14 2259
40 % 1 14 2247
30 % 1 14 2139
Entity #6 | Chains: J,T
ATPASE INHIBITOR, MITOCHONDRIAL protein, length: 63 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 50192
95 % 1 1 37442 Flexibility: No
Max RMSD: 0.0, Avg RMSD: 0.0
PDBFlex
90 % 1 1 35723
70 % 1 1 31727
50 % 1 1 27088
40 % 1 1 23913
30 % 1 1 20282

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures