Sequence Similarity Clusters for the Entities in PDB 3ZFG

Entity #1 | Chains: A
VP1 protein, length: 298 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 9 7729
95 % 13 26 1190
90 % 13 26 1197
70 % 17 33 1072
50 % 17 37 1043
40 % 63 160 295
30 % 63 160 312
Entity #2 | Chains: B
VP2 protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 15 4147
95 % 11 23 2786 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.8
PDBFlex
90 % 11 23 2844
70 % 13 31 1954
50 % 58 160 341
40 % 58 160 368
30 % 74 197 181
Entity #3 | Chains: C
VP3 protein, length: 242 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 7 10877
95 % 13 30 1062 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 1.4
PDBFlex
90 % 13 30 1093
70 % 17 41 917
50 % 63 169 254
40 % 63 171 279
30 % 80 210 164
Entity #4 | Chains: D
VP4 protein, length: 69 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 12 5192
95 % 8 12 5524 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 8 12 5552
70 % 9 14 4911
50 % 52 122 457
40 % 53 123 487
30 % 53 123 487

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures