Sequence Similarity Clusters for the Entities in PDB 3ZFG

Entity #1 | Chains: A
VP1 protein, length: 298 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 7 9889
95 % 13 25 1242 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.6
PDBFlex
90 % 13 26 1106
70 % 17 33 997
50 % 17 33 1039
40 % 64 149 283
30 % 64 149 289
Entity #2 | Chains: B
VP2 protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 7 9980
95 % 11 23 2564 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.8
PDBFlex
90 % 11 23 2613
70 % 13 29 1952
50 % 59 151 305
40 % 59 151 317
30 % 74 186 166
Entity #3 | Chains: C
VP3 protein, length: 242 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 7 10007
95 % 13 30 999 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 1.4
PDBFlex
90 % 13 30 1024
70 % 17 37 917
50 % 64 158 249
40 % 64 160 264
30 % 80 197 151
Entity #4 | Chains: D
VP4 protein, length: 69 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 12 5253
95 % 8 12 5883 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 8 12 5877
70 % 9 14 4624
50 % 53 117 432
40 % 54 118 460
30 % 54 118 457

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.