Sequence Similarity Clusters for the Entities in PDB 3ZFG

Entity #1 | Chains: A
VP1 protein, length: 298 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 10 7156
95 % 13 27 1245 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.6
PDBFlex
90 % 13 27 1291
70 % 17 34 1115
50 % 17 49 913
40 % 63 189 278
30 % 63 189 290
Entity #2 | Chains: B
VP2 protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 15 4470
95 % 11 24 2761 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.8
PDBFlex
90 % 11 24 2824
70 % 13 40 1549
50 % 58 186 297
40 % 62 195 303
30 % 74 224 175
Entity #3 | Chains: C
VP3 protein, length: 242 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 7 11601
95 % 13 31 1125 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 1.4
PDBFlex
90 % 13 31 1163
70 % 17 53 791
50 % 63 198 236
40 % 63 200 259
30 % 80 240 163
Entity #4 | Chains: D
VP4 protein, length: 69 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 8 12 5557
95 % 8 12 5883 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 8 12 5896
70 % 9 18 3885
50 % 52 132 449
40 % 53 133 483
30 % 53 133 486

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures