Sequence Similarity Clusters for the Entities in PDB 3ZFF

Entity #1 | Chains: A
VP1 protein, length: 297 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 3 7 10188
95 % 16 25 1270
90 % 16 26 1138
70 % 21 33 1030
50 % 21 36 1008
40 % 69 158 274
30 % 69 158 282
Entity #2 | Chains: B
VP2 protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 7 10291
95 % 14 23 2645 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.7
PDBFlex
90 % 14 23 2691
70 % 17 31 1837
50 % 64 159 294
40 % 64 159 310
30 % 81 194 165
Entity #3 | Chains: C
VP3 protein, length: 242 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 7 10314
95 % 16 30 1021 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 1.4
PDBFlex
90 % 16 30 1048
70 % 21 40 895
50 % 69 167 239
40 % 69 169 255
30 % 87 208 146
Entity #4 | Chains: D
VP4 protein, length: 69 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 10 12 5461
95 % 10 12 6099
90 % 10 12 6092
70 % 12 14 4811
50 % 57 122 428
40 % 58 123 455
30 % 58 123 454

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.