Sequence Similarity Clusters for the Entities in PDB 3ZFF

Entity #1 | Chains: A
VP1 protein, length: 297 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 7 10066
95 % 16 25 1259 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.6
PDBFlex
90 % 16 26 1123
70 % 21 33 1013
50 % 21 33 1053
40 % 70 155 276
30 % 70 155 284
Entity #2 | Chains: B
VP2 protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 7 10165
95 % 14 23 2613 Flexibility: No
Max RMSD: 1.6, Avg RMSD: 0.4
PDBFlex
90 % 14 23 2659
70 % 17 29 1990
50 % 65 157 295
40 % 65 157 309
30 % 82 192 180
Entity #3 | Chains: C
VP3 protein, length: 242 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 7 10188
95 % 16 30 1015 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 1.4
PDBFlex
90 % 16 30 1039
70 % 21 37 931
50 % 70 164 241
40 % 70 166 258
30 % 88 203 157
Entity #4 | Chains: D
VP4 protein, length: 69 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 12 5393
95 % 10 12 6027 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 10 12 6018
70 % 12 14 4750
50 % 58 122 421
40 % 59 123 446
30 % 59 123 446

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.