Sequence Similarity Clusters for the Entities in PDB 3ZFF

Entity #1 | Chains: A
VP1 protein, length: 297 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 9 7788
95 % 16 26 1215 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.6
PDBFlex
90 % 16 26 1223
70 % 21 33 1077
50 % 21 37 1049
40 % 69 160 301
30 % 69 160 314
Entity #2 | Chains: B
VP2 protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 15 4167
95 % 14 23 2799 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 0.8
PDBFlex
90 % 14 23 2859
70 % 17 31 1964
50 % 64 160 350
40 % 64 160 375
30 % 82 197 181
Entity #3 | Chains: C
VP3 protein, length: 242 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 7 10945
95 % 16 30 1070 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 1.4
PDBFlex
90 % 16 30 1101
70 % 21 41 923
50 % 69 169 258
40 % 69 171 282
30 % 88 210 162
Entity #4 | Chains: D
VP4 protein, length: 69 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 10 12 5220
95 % 10 12 5552 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 10 12 5583
70 % 12 14 4943
50 % 57 122 459
40 % 58 123 491
30 % 58 123 490

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures