Sequence Similarity Clusters for the Entities in PDB 3ZFE

Entity #1 | Chains: A
VP1 protein, length: 298 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 10066
95 % 4 25 1259 Flexibility: Low
Max RMSD: 2.8, Avg RMSD: 1.6
PDBFlex
90 % 4 26 1123
70 % 5 33 1013
50 % 5 33 1053
40 % 28 155 276
30 % 28 155 284
Entity #2 | Chains: B
VP2 protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 10165
95 % 4 23 2613 Flexibility: No
Max RMSD: 1.6, Avg RMSD: 0.4
PDBFlex
90 % 4 23 2659
70 % 4 29 1990
50 % 27 157 295
40 % 27 157 309
30 % 37 192 180
Entity #3 | Chains: C
VP3 protein, length: 242 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 10188
95 % 4 30 1015
90 % 4 30 1039
70 % 5 37 931
50 % 28 164 241
40 % 28 166 258
30 % 39 203 157
Entity #4 | Chains: D
VP4 protein, length: 69 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 12 5393
95 % 2 12 6027 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 2 12 6018
70 % 2 14 4750
50 % 25 122 421
40 % 25 123 446
30 % 25 123 446

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.