Sequence Similarity Clusters for the Entities in PDB 3ZFE

Entity #1 | Chains: A
VP1 protein, length: 298 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 10435
95 % 4 25 1300
90 % 4 26 1166
70 % 5 33 1050
50 % 5 37 1022
40 % 27 160 277
30 % 27 160 287
Entity #2 | Chains: B
VP2 protein, length: 254 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 7 10541
95 % 4 23 2717
90 % 4 23 2768
70 % 4 31 1880
50 % 26 160 315
40 % 26 160 329
30 % 36 195 167
Entity #3 | Chains: C
VP3 protein, length: 242 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 7 10565
95 % 4 30 1047 Flexibility: Low
Max RMSD: 3.2, Avg RMSD: 1.4
PDBFlex
90 % 4 30 1072
70 % 5 41 895
50 % 27 169 244
40 % 27 171 260
30 % 38 210 149
Entity #4 | Chains: D
VP4 protein, length: 69 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 12 5608
95 % 2 12 6242 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.5
PDBFlex
90 % 2 12 6239
70 % 2 14 4922
50 % 24 122 441
40 % 24 123 466
30 % 24 123 462

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures